View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1380_high_36 (Length: 276)

Name: NF1380_high_36
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1380_high_36
NF1380_high_36
[»] chr3 (4 HSPs)
chr3 (30-261)||(25850745-25850977)
chr3 (184-231)||(35508327-35508374)
chr3 (232-261)||(22470402-22470431)
chr3 (232-264)||(2508719-2508751)
[»] chr8 (5 HSPs)
chr8 (232-264)||(19705051-19705083)
chr8 (230-264)||(24518586-24518620)
chr8 (232-261)||(21695413-21695442)
chr8 (230-263)||(24389822-24389855)
chr8 (232-260)||(12342891-12342919)
[»] chr7 (6 HSPs)
chr7 (230-261)||(13280827-13280858)
chr7 (231-260)||(7399396-7399425)
chr7 (232-261)||(9078881-9078910)
chr7 (232-261)||(10332472-10332501)
chr7 (232-261)||(20577559-20577588)
chr7 (232-261)||(23173685-23173714)
[»] chr5 (3 HSPs)
chr5 (181-231)||(32746273-32746323)
chr5 (232-261)||(17831761-17831790)
chr5 (232-261)||(26315254-26315283)
[»] chr1 (5 HSPs)
chr1 (230-260)||(15542306-15542336)
chr1 (232-261)||(24464682-24464711)
chr1 (232-260)||(15526806-15526834)
chr1 (232-260)||(27912133-27912161)
chr1 (180-232)||(34738762-34738814)
[»] scaffold0043 (1 HSPs)
scaffold0043 (232-261)||(88436-88465)
[»] chr6 (1 HSPs)
chr6 (232-261)||(21687129-21687158)
[»] chr4 (3 HSPs)
chr4 (232-261)||(17277913-17277942)
chr4 (233-261)||(8968072-8968100)
chr4 (232-264)||(9849707-9849739)
[»] chr2 (4 HSPs)
chr2 (232-260)||(17891800-17891828)
chr2 (233-261)||(18120546-18120574)
chr2 (232-264)||(32130699-32130731)
chr2 (232-264)||(32139334-32139366)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 30 - 261
Target Start/End: Original strand, 25850745 - 25850977
Alignment:
Q  30 catttcacataacaaaatagtgattgattctaagacattttatccatatgttttttcgtcaaaagaacataaccaataattgattgatatttaaaactta 129  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25850745 catttcacataacaaaatagtgattgattctaagacattttaaccatat-ttttttcgtcaaaagaagataaccaataattgattgatatttaaaactta 25850843  T
Q  130 atttaagtaaatgcatataagatcaattt--tnnnnnnngattatgcgatatatagagtttaatggtggttggttgacaatacaaaacaaccttgcacat 227  Q
    |||||||||||||| ||||||||||||||           || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25850844 atttaagtaaatgcgtataagatcaatttaaaaaaaataaataatgtgatatatagagtttaatggtggttggttgacaatacaaaacaaccttgcacac 25850943  T
Q  228 acaatgatgacatgtcatcttacgttattcttag 261  Q
    ||||||| |||| ||||||||| |||||||||||    
T  25850944 acaatgaagacaggtcatcttatgttattcttag 25850977  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 35508327 - 35508374
Alignment:
Q  184 agtttaatggtggttggttgacaatacaaaacaaccttgcacatacaa 231  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  35508327 agtttaatggtggtgggttgacaatccaaaacaactttgcacatacaa 35508374  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 22470402 - 22470431
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  22470402 tgatgacatgtcatcttacgttattcttag 22470431  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 2508719 - 2508751
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttagtat 264  Q
    ||||| |||||||||||||||||||||||||||    
T  2508719 tgatggcatgtcatcttacgttattcttagtat 2508751  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 19705083 - 19705051
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttagtat 264  Q
    |||||||||||||||||||||||||||||||||    
T  19705083 tgatgacatgtcatcttacgttattcttagtat 19705051  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 264
Target Start/End: Original strand, 24518586 - 24518620
Alignment:
Q  230 aatgatgacatgtcatcttacgttattcttagtat 264  Q
    |||||||||||||||||| ||||||||||||||||    
T  24518586 aatgatgacatgtcatctaacgttattcttagtat 24518620  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 21695413 - 21695442
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  21695413 tgatgacatgtcatcttacgttattcttag 21695442  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 24389855 - 24389822
Alignment:
Q  230 aatgatgacatgtcatcttacgttattcttagta 263  Q
    |||||||||| |||||||||||||||||||||||    
T  24389855 aatgatgacaggtcatcttacgttattcttagta 24389822  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 260
Target Start/End: Original strand, 12342891 - 12342919
Alignment:
Q  232 tgatgacatgtcatcttacgttattctta 260  Q
    |||||||||||||||||||||||||||||    
T  12342891 tgatgacatgtcatcttacgttattctta 12342919  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 261
Target Start/End: Complemental strand, 13280858 - 13280827
Alignment:
Q  230 aatgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||||    
T  13280858 aatgatgacatgtcatcttacgttattcttag 13280827  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 231 - 260
Target Start/End: Complemental strand, 7399425 - 7399396
Alignment:
Q  231 atgatgacatgtcatcttacgttattctta 260  Q
    ||||||||||||||||||||||||||||||    
T  7399425 atgatgacatgtcatcttacgttattctta 7399396  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 9078881 - 9078910
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  9078881 tgatgacatgtcatcttacgttattcttag 9078910  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 10332501 - 10332472
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  10332501 tgatgacatgtcatcttacgttattcttag 10332472  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 20577588 - 20577559
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  20577588 tgatgacatgtcatcttacgttattcttag 20577559  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 23173685 - 23173714
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  23173685 tgatgacatgtcatcttacgttattcttag 23173714  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 32746273 - 32746323
Alignment:
Q  181 tagagtttaatggtggttggttgacaatacaaaacaaccttgcacatacaa 231  Q
    |||||||||||| |||| |||||||| | ||||||||| ||||||||||||    
T  32746273 tagagtttaatgctggtgggttgacagttcaaaacaactttgcacatacaa 32746323  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 17831790 - 17831761
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  17831790 tgatgacatgtcatcttacgttattcttag 17831761  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 26315283 - 26315254
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  26315283 tgatgacatgtcatcttacgttattcttag 26315254  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 260
Target Start/End: Original strand, 15542306 - 15542336
Alignment:
Q  230 aatgatgacatgtcatcttacgttattctta 260  Q
    |||||||||||||||||||||||||||||||    
T  15542306 aatgatgacatgtcatcttacgttattctta 15542336  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 24464711 - 24464682
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  24464711 tgatgacatgtcatcttacgttattcttag 24464682  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 260
Target Start/End: Original strand, 15526806 - 15526834
Alignment:
Q  232 tgatgacatgtcatcttacgttattctta 260  Q
    |||||||||||||||||||||||||||||    
T  15526806 tgatgacatgtcatcttacgttattctta 15526834  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 260
Target Start/End: Complemental strand, 27912161 - 27912133
Alignment:
Q  232 tgatgacatgtcatcttacgttattctta 260  Q
    |||||||||||||||||||||||||||||    
T  27912161 tgatgacatgtcatcttacgttattctta 27912133  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 34738814 - 34738762
Alignment:
Q  180 atagagtttaatggtggttggttgacaatacaaaacaaccttgcacatacaat 232  Q
    |||||||||||||||||| |||||||  | ||||||||  |||||||||||||    
T  34738814 atagagtttaatggtggtgggttgacggtccaaaacaattttgcacatacaat 34738762  T

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Target: scaffold0043 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 88436 - 88465
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  88436 tgatgacatgtcatcttacgttattcttag 88465  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 21687129 - 21687158
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  21687129 tgatgacatgtcatcttacgttattcttag 21687158  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 17277942 - 17277913
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  17277942 tgatgacatgtcatcttacgttattcttag 17277913  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 8968072 - 8968100
Alignment:
Q  233 gatgacatgtcatcttacgttattcttag 261  Q
    |||||||||||||||||||||||||||||    
T  8968072 gatgacatgtcatcttacgttattcttag 8968100  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 9849707 - 9849739
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttagtat 264  Q
    |||||||| ||||||||||||||||||||||||    
T  9849707 tgatgacaggtcatcttacgttattcttagtat 9849739  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 260
Target Start/End: Complemental strand, 17891828 - 17891800
Alignment:
Q  232 tgatgacatgtcatcttacgttattctta 260  Q
    |||||||||||||||||||||||||||||    
T  17891828 tgatgacatgtcatcttacgttattctta 17891800  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 18120546 - 18120574
Alignment:
Q  233 gatgacatgtcatcttacgttattcttag 261  Q
    |||||||||||||||||||||||||||||    
T  18120546 gatgacatgtcatcttacgttattcttag 18120574  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 32130699 - 32130731
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttagtat 264  Q
    |||||||| ||||||||||||||||||||||||    
T  32130699 tgatgacaggtcatcttacgttattcttagtat 32130731  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 32139334 - 32139366
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttagtat 264  Q
    |||||||| ||||||||||||||||||||||||    
T  32139334 tgatgacaggtcatcttacgttattcttagtat 32139366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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