View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_high_37 (Length: 268)
Name: NF1380_high_37
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 46 - 242
Target Start/End: Complemental strand, 41561291 - 41561095
Alignment:
| Q |
46 |
atataagactctgtcaagaatgaaagtgtatgaacagacagtgcttcgatttcaaacttcactcctttctgcaacatcattttgagctccaaccttcata |
145 |
Q |
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| T |
41561291 |
atataagactctgtcaagaatgaaagtgtatgaacagacagtgcttcgatttcaaacttcactcctttctgcaacatcattttgagctccaaccttcata |
41561192 |
T |
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| Q |
146 |
acaaaacattaacaaaagacgcatgctataaaatctcaaaccagtagacagatgtaatgtaaataaatgttacctccattgtggcacctccctttgc |
242 |
Q |
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| T |
41561191 |
acaaaacattaacaaaagacgcatgctataaaatctcaaaccagtagacagatgtaatgtaaataaatgttacctccattgtggcacctccctttgc |
41561095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 46 - 242
Target Start/End: Complemental strand, 41545125 - 41544919
Alignment:
| Q |
46 |
atataagactctgtcaagaatgaaagtgtatgaacagacagtgcttcgatttcaaacttcactcctttctgcaacatcattttgagctccaaccttcata |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
41545125 |
atataagactctgtcaagaatgaaagtgtatgaacagatagtgcttcgatttcaaacttcactcctttctgcaacatcattctaagctccaaccttcata |
41545026 |
T |
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| Q |
146 |
acaaaacattaacaaaagacgcatgctataaaatctcaaaccagt---------agacagatgtaatgtaaata-aatgttacctccattgtggcacctc |
235 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| |||||| ||| ||| ||||||||||| ||| ||||| |
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| T |
41545025 |
acaaaacattaacataagacacatgctataaaatctcaaaccagttgaacaaaaagacagatggaatgtatatataatattacctccattctgggacctc |
41544926 |
T |
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| Q |
236 |
cctttgc |
242 |
Q |
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||||||| |
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| T |
41544925 |
cctttgc |
41544919 |
T |
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