View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1380_high_38 (Length: 260)

Name: NF1380_high_38
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1380_high_38
NF1380_high_38
[»] chr3 (12 HSPs)
chr3 (30-260)||(679875-680105)
chr3 (30-260)||(747793-748028)
chr3 (120-260)||(755300-755445)
chr3 (104-260)||(2475887-2476048)
chr3 (103-260)||(2474346-2474508)
chr3 (104-253)||(9566497-9566651)
chr3 (104-260)||(7334939-7335100)
chr3 (193-260)||(9595294-9595361)
chr3 (104-260)||(7325065-7325226)
chr3 (219-260)||(9562631-9562672)
chr3 (82-126)||(2634861-2634905)
chr3 (104-142)||(7443785-7443823)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 680105 - 679875
Alignment:
Q  30 gtagaagcgatggggaggaagacccaaacgacatcatcgtccatacggctggaaccataacatctccgccgccacttcccactcttctcttcgatgtcct 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  680105 gtagaagcgatggggaggaagacccaaacgacatcatcgtccatacggctggaaccataacatctccgccaccacttcccactcttctcttcgatgtcct 680006  T
Q  130 ccctgagattctcggtaggtttcccatcaaattaccaacttcgatgcctctgtaagnnnnnnnattctcttattgctgatccaacattcgcaaagaagca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  680005 ccctgagattctcggtaggtttcccatcaaattaccaacttcgatgcctctgtaagtttttttattctcttattgctgatccaacattcgcaaagaagca 679906  T
Q  230 ccttcaattatcaactaagcgccacaacctc 260  Q
    |||||||||||||||||||||||||||||||    
T  679905 ccttcaattatcaactaagcgccacaacctc 679875  T

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Target: chr3; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 748028 - 747793
Alignment:
Q  30 gtagaagcgatggggaggaagacccaaacgacatcatcgtccatacggctggaaccataacatctccgccgccacttcccactcttctcttcgatgtcct 129  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||  |    
T  748028 gtagaagcgatgaggaggaagatccaaacgacatcatcgtccatacggctggaaccataacatctccgccgccacttcccactcttccattcgatgtttt 747929  T
Q  130 ccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctcttattgctgatccaacattcgcaaag 224  Q
    ||||||| ||||||||||| |||||||||||||||     |||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  747928 ccctgagtttctcggtaggcttcccatcaaattactcgtacaacttcgatgcctctgtaagtttttttattctcttattgctgatccaacattcgcaaag 747829  T
Q  225 aagcaccttcaattatcaactaagcgccacaacctc 260  Q
    |||||||||||||||||||||||||||||| |||||    
T  747828 aagcaccttcaattatcaactaagcgccaccacctc 747793  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 260
Target Start/End: Complemental strand, 755445 - 755300
Alignment:
Q  120 tcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctcttattgctgatccaac 214  Q
    |||||||||| |||||||||||  ||||| |||||||||||||||     || || || ||||||||||||       ||||||||||| |||||||||     
T  755445 tcgatgtcctgcctgagattctttgtaggcttcccatcaaattactcggacagctgcggtgcctctgtaagtctttcaattctcttatttctgatccaaa 755346  T
Q  215 attcgcaaagaagcaccttcaattatcaactaagcgccacaacctc 260  Q
    ||||||||| || || |||||||| ||||| ||||||||| |||||    
T  755345 attcgcaaaaaaacatcttcaattgtcaacaaagcgccaccacctc 755300  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 260
Target Start/End: Original strand, 2475887 - 2476048
Alignment:
Q  104 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 198  Q
    ||||||||||||| ||| |||||||| |||||||||||   |||||| ||  |||||||||     || ||||| ||||| ||||||       ||||||    
T  2475887 cttcccactcttccctttgatgtcctgcctgagattctgtttaggttacctgtcaaattactcgtacagcttcggtgcctttgtaagtttttcaattctc 2475986  T
Q  199 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctc 260  Q
    ||||| ||||||| | |||||||||||| ||||||||||| ||||| ||||||||| |||||    
T  2475987 ttatttctgatcctaaattcgcaaagaaacaccttcaattgtcaacaaagcgccaccacctc 2476048  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 260
Target Start/End: Original strand, 2474346 - 2474508
Alignment:
Q  103 acttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattct 197  Q
    |||||||||||||| ||| ||| |||| |||||||||||| ||||| ||||| |||||||||     || ||||| ||||||||||||       |||||    
T  2474346 acttcccactcttccctttgatctcctgcctgagattctctgtaggcttcccgtcaaattacctgtacagcttcggtgcctctgtaagttctttaattct 2474445  T
Q  198 cttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctc 260  Q
     | ||| |  |||| | |||||||||||| ||||||||||||||||  ||||||||| |||||    
T  2474446 ttaatttccaatcccagattcgcaaagaaacaccttcaattatcaaacaagcgccaccacctc 2474508  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 253
Target Start/End: Complemental strand, 9566651 - 9566497
Alignment:
Q  104 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 198  Q
    ||||| ||||||| |||||||||| | |||||||||||  ||||| ||||||| |||||||     || ||||| |||||||| |||       ||||||    
T  9566651 cttcctactcttcccttcgatgtcttgcctgagattctttgtaggcttcccatgaaattactcggacagcttcggtgcctctgcaagtccttcaattctc 9566552  T
Q  199 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgcca 253  Q
    ||||| ||||||||| ||||||||| || || |||||||| ||||| ||||||||    
T  9566551 ttatttctgatccaaaattcgcaaaaaaacatcttcaattgtcaacaaagcgcca 9566497  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 260
Target Start/End: Complemental strand, 7335100 - 7334939
Alignment:
Q  104 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 198  Q
    ||||| |||||||  || |||||||| |||||||||||  ||||| ||||  | |||||||     || |||||||| |||||||||       |||||     
T  7335100 cttcctactcttccgtttgatgtcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgtctctgtaagttctttaattctg 7335001  T
Q  199 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctc 260  Q
    ||||  ||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||    
T  7335000 ttatctctgatccaaaattcgcaaagaagcaccttcaattgtcaacaaagcgccaccacctc 7334939  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 9595361 - 9595294
Alignment:
Q  193 attctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctc 260  Q
    ||||||||||| ||||||||| ||| |||||||| ||||||||||| ||||| ||||||||| |||||    
T  9595361 attctcttatttctgatccaaaatttgcaaagaatcaccttcaattgtcaacaaagcgccaccacctc 9595294  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 260
Target Start/End: Complemental strand, 7325226 - 7325065
Alignment:
Q  104 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 198  Q
    ||||| |||||||  ||||||||| | |||||||||||| | ||| ||||  | |||||||     || ||||| ||||||||||||       |||||     
T  7325226 cttccaactcttcctttcgatgtcttacctgagattctctgcaggcttcctgtgaaattactcatacagcttcggtgcctctgtaagttcttcaattctt 7325127  T
Q  199 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctc 260  Q
    | ||| ||||||| || ||||||||||| || |||||||||||||||||||||||| |||||    
T  7325126 taatttctgatcccactttcgcaaagaaacatcttcaattatcaactaagcgccaccacctc 7325065  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 9562672 - 9562631
Alignment:
Q  219 gcaaagaagcaccttcaattatcaactaagcgccacaacctc 260  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  9562672 gcaaagaagcaccttcaattgtcaactaagcgccaccacctc 9562631  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 2634861 - 2634905
Alignment:
Q  82 aaccataacatctccgccgccacttcccactcttctcttcgatgt 126  Q
    ||||||||||||||||||||||||||| |||||||  ||||||||    
T  2634861 aaccataacatctccgccgccacttccgactcttccgttcgatgt 2634905  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 7443823 - 7443785
Alignment:
Q  104 cttcccactcttctcttcgatgtcctccctgagattctc 142  Q
    ||||||||||||| ||||||| |||||||||||||||||    
T  7443823 cttcccactcttcccttcgatctcctccctgagattctc 7443785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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