View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_high_40 (Length: 254)
Name: NF1380_high_40
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_high_40 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 29 - 254
Target Start/End: Complemental strand, 23767228 - 23767003
Alignment:
| Q |
29 |
actagctacatatcaaccacctcatcttcttaaatataaatttataaccactacttcttattaatatatcttcttcaacctagnnnnnnnattatatgga |
128 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23767228 |
actagctacatatcaaccacctcatcttcttaaatctaaatttataaccactacttcttattaatatatcttcttcaacctagtttttttattatatgga |
23767129 |
T |
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| Q |
129 |
agttcaagatcaagaatatcaaccttcaataatgaaagagcttaagccaaaaaagcaactagtgcaacaacatgaagaaaaacaacacaaaaatgttcct |
228 |
Q |
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||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23767128 |
agttcaagatcaagagtaccaatcttcaataatgaaagagcttaagccaaaaaagcaactagtgcaacaacatgaagaaaaacaacacaaaaatgttcct |
23767029 |
T |
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| Q |
229 |
ttgaatttgaagatcaatgttccatc |
254 |
Q |
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|||||||||||||||||||||||||| |
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| T |
23767028 |
ttgaatttgaagatcaatgttccatc |
23767003 |
T |
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