View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1380_high_46 (Length: 251)

Name: NF1380_high_46
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1380_high_46
NF1380_high_46
[»] chr4 (23 HSPs)
chr4 (1-249)||(37781627-37781876)
chr4 (89-212)||(5269312-5269437)
chr4 (75-208)||(4956027-4956157)
chr4 (89-208)||(10047233-10047351)
chr4 (136-242)||(873607-873713)
chr4 (89-209)||(16630805-16630923)
chr4 (89-209)||(25862146-25862265)
chr4 (105-212)||(18377241-18377348)
chr4 (92-240)||(8114828-8114973)
chr4 (135-212)||(34670784-34670863)
chr4 (89-198)||(16624144-16624252)
chr4 (152-209)||(38152563-38152619)
chr4 (89-209)||(54867036-54867157)
chr4 (89-209)||(5143113-5143232)
chr4 (89-209)||(39245847-39245967)
chr4 (145-209)||(42599698-42599762)
chr4 (102-209)||(3777417-3777522)
chr4 (89-209)||(24333664-24333782)
chr4 (157-203)||(3991945-3991991)
chr4 (89-202)||(1983429-1983542)
chr4 (89-209)||(5147531-5147650)
chr4 (89-215)||(31985751-31985876)
chr4 (79-185)||(3677684-3677787)
[»] chr5 (15 HSPs)
chr5 (79-214)||(34842448-34842582)
chr5 (75-225)||(30899697-30899850)
chr5 (78-240)||(5610985-5611147)
chr5 (89-209)||(14520083-14520201)
chr5 (89-209)||(3880156-3880273)
chr5 (89-209)||(28832114-28832232)
chr5 (135-228)||(2630130-2630223)
chr5 (89-209)||(17004084-17004203)
chr5 (89-209)||(19588600-19588719)
chr5 (152-209)||(12084301-12084357)
chr5 (90-209)||(24553630-24553748)
chr5 (89-209)||(9353457-9353573)
chr5 (160-209)||(11181956-11182005)
chr5 (89-209)||(36932475-36932593)
chr5 (89-209)||(42127534-42127652)
[»] chr2 (32 HSPs)
chr2 (92-209)||(2869818-2869938)
chr2 (48-249)||(16388554-16388757)
chr2 (135-220)||(28770887-28770972)
chr2 (136-212)||(3277903-3277979)
chr2 (89-209)||(23078596-23078715)
chr2 (144-210)||(5699694-5699760)
chr2 (89-208)||(33528746-33528864)
chr2 (89-208)||(34388713-34388830)
chr2 (89-209)||(8039913-8040033)
chr2 (89-209)||(10445568-10445689)
chr2 (89-209)||(10707376-10707496)
chr2 (135-212)||(18674521-18674598)
chr2 (89-209)||(31055896-31056015)
chr2 (89-212)||(20522074-20522196)
chr2 (89-195)||(27149002-27149109)
chr2 (92-212)||(40014785-40014902)
chr2 (89-208)||(17865057-17865175)
chr2 (135-209)||(8390274-8390347)
chr2 (157-215)||(34393347-34393405)
chr2 (138-212)||(39532835-39532909)
chr2 (89-209)||(16940333-16940452)
chr2 (89-209)||(17010998-17011117)
chr2 (135-203)||(12632456-12632524)
chr2 (79-187)||(16388291-16388399)
chr2 (89-209)||(33117990-33118109)
chr2 (89-209)||(42039795-42039912)
chr2 (89-208)||(13569182-13569300)
chr2 (89-199)||(14699128-14699241)
chr2 (89-209)||(36757888-36758004)
chr2 (135-208)||(39482830-39482903)
chr2 (60-119)||(28770997-28771056)
chr2 (89-195)||(34682472-34682578)
[»] chr3 (24 HSPs)
chr3 (78-240)||(21156272-21156434)
chr3 (103-235)||(25516848-25516981)
chr3 (80-209)||(27038135-27038262)
chr3 (89-209)||(8370602-8370720)
chr3 (89-209)||(27026799-27026917)
chr3 (89-209)||(30709906-30710024)
chr3 (89-208)||(48438068-48438186)
chr3 (92-215)||(27986554-27986675)
chr3 (89-189)||(36028959-36029058)
chr3 (89-209)||(40592897-40593016)
chr3 (85-208)||(16264199-16264320)
chr3 (154-213)||(25929552-25929611)
chr3 (135-209)||(26298888-26298961)
chr3 (91-215)||(29100026-29100147)
chr3 (82-220)||(34482048-34482185)
chr3 (152-209)||(3328470-3328527)
chr3 (89-215)||(1309709-1309833)
chr3 (89-215)||(32143176-32143300)
chr3 (152-195)||(35925398-35925441)
chr3 (89-209)||(1417604-1417722)
chr3 (89-209)||(3716116-3716236)
chr3 (89-209)||(39040108-39040224)
chr3 (160-208)||(18552998-18553046)
chr3 (152-188)||(47924007-47924043)
[»] chr7 (18 HSPs)
chr7 (89-228)||(28617330-28617471)
chr7 (89-212)||(20283943-20284065)
chr7 (89-209)||(9185287-9185406)
chr7 (89-209)||(9190132-9190251)
chr7 (89-209)||(9235679-9235800)
chr7 (89-209)||(2647820-2647940)
chr7 (89-209)||(49091516-49091634)
chr7 (89-209)||(4796791-4796913)
chr7 (89-208)||(46516435-46516554)
chr7 (135-209)||(29159703-29159776)
chr7 (89-209)||(21988760-21988880)
chr7 (169-215)||(761109-761155)
chr7 (152-209)||(55864-55920)
chr7 (89-209)||(2479193-2479309)
chr7 (89-209)||(23403137-23403256)
chr7 (160-210)||(27984411-27984461)
chr7 (92-209)||(21983139-21983256)
chr7 (75-115)||(8140952-8140992)
[»] chr1 (20 HSPs)
chr1 (89-209)||(29651664-29651784)
chr1 (148-208)||(48382607-48382667)
chr1 (91-220)||(32737109-32737236)
chr1 (89-209)||(40816856-40816976)
chr1 (89-209)||(775526-775645)
chr1 (145-240)||(2210358-2210451)
chr1 (89-209)||(21536695-21536812)
chr1 (89-209)||(13598250-13598371)
chr1 (144-230)||(35109638-35109724)
chr1 (144-213)||(9023952-9024021)
chr1 (152-209)||(27104496-27104553)
chr1 (85-209)||(47102965-47103087)
chr1 (89-209)||(47704060-47704181)
chr1 (48-215)||(8281135-8281296)
chr1 (89-209)||(16124641-16124760)
chr1 (90-209)||(19072781-19072900)
chr1 (90-209)||(19120671-19120790)
chr1 (152-209)||(47098948-47099005)
chr1 (144-208)||(10996862-10996926)
chr1 (89-209)||(26645023-26645140)
[»] chr6 (21 HSPs)
chr6 (89-241)||(33721650-33721800)
chr6 (89-209)||(22963553-22963673)
chr6 (89-209)||(23824720-23824840)
chr6 (75-207)||(1115229-1115358)
chr6 (89-230)||(30519123-30519265)
chr6 (132-247)||(9036157-9036272)
chr6 (89-209)||(10077289-10077408)
chr6 (89-209)||(31979367-31979486)
chr6 (154-215)||(28301082-28301143)
chr6 (154-215)||(28510930-28510991)
chr6 (89-209)||(18232699-18232818)
chr6 (89-209)||(21355892-21356008)
chr6 (152-209)||(4629869-4629926)
chr6 (152-209)||(5017593-5017649)
chr6 (89-209)||(31936441-31936560)
chr6 (89-209)||(5757603-5757719)
chr6 (144-220)||(30683792-30683868)
chr6 (75-126)||(99000-99051)
chr6 (160-215)||(21247216-21247271)
chr6 (89-189)||(5572740-5572839)
chr6 (135-215)||(22708919-22708997)
[»] chr8 (15 HSPs)
chr8 (75-209)||(5990684-5990816)
chr8 (89-209)||(5702607-5702726)
chr8 (102-213)||(28307428-28307539)
chr8 (152-209)||(26403354-26403411)
chr8 (89-209)||(9765944-9766063)
chr8 (144-215)||(11771857-11771928)
chr8 (144-215)||(34477336-34477407)
chr8 (152-208)||(28387898-28387955)
chr8 (75-184)||(7493210-7493325)
chr8 (139-211)||(8863752-8863824)
chr8 (135-209)||(4696720-4696793)
chr8 (89-209)||(19752518-19752637)
chr8 (136-209)||(23799701-23799774)
chr8 (89-209)||(4455882-4455999)
chr8 (188-240)||(31513417-31513469)
[»] scaffold0076 (2 HSPs)
scaffold0076 (144-249)||(16071-16178)
scaffold0076 (75-121)||(16190-16236)
[»] scaffold0148 (1 HSPs)
scaffold0148 (135-209)||(10628-10702)
[»] scaffold0006 (2 HSPs)
scaffold0006 (89-209)||(2346-2465)
scaffold0006 (89-209)||(5535-5656)
[»] scaffold0036 (1 HSPs)
scaffold0036 (89-209)||(85539-85656)
[»] scaffold0184 (2 HSPs)
scaffold0184 (89-149)||(29673-29733)
scaffold0184 (166-202)||(29613-29649)
[»] scaffold0087 (1 HSPs)
scaffold0087 (89-209)||(44086-44202)
[»] scaffold0078 (2 HSPs)
scaffold0078 (89-149)||(43111-43171)
scaffold0078 (162-202)||(43191-43231)
[»] scaffold0002 (1 HSPs)
scaffold0002 (144-208)||(14593-14657)
[»] scaffold0176 (1 HSPs)
scaffold0176 (154-212)||(17181-17239)
[»] scaffold0016 (1 HSPs)
scaffold0016 (154-215)||(102603-102664)
[»] scaffold0098 (1 HSPs)
scaffold0098 (89-209)||(45109-45225)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 37781627 - 37781876
Alignment:
Q  1 gatttgtggaaaatcaagttcgttttatagataaaacaattcttggt-ttgtgaattcagacaaataattataataataaaacttagacgtgtggagcaa 99  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  37781627 gatttatgaaaaatcaagttcgttttatggataaaacaattcttggtgttgtgaattcaaacaaataattataataataaaacttagaagtgtggagcaa 37781726  T
Q  100 aagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaa 199  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37781727 aagaagtagtcattaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaa 37781826  T
Q  200 caaagataagaaagaatagaagaaaacaacaaaccagtattatctaccca 249  Q
    ||||||||||||| |||||||||||||||||||||| |||| | ||||||    
T  37781827 caaagataagaaataatagaagaaaacaacaaaccaatattgtttaccca 37781876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 5269437 - 5269312
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaa--tagacctagatctaagtgtgaagcaacaccacaagc 186  Q
    |||||||||||| ||||| || |||||||  |||||| ||  ||| |||||||| |||||||  || ||||||||||||||||  |||||||||||||||    
T  5269437 gtgtggagcaaaggaagtggtaatcaatggataaagtgtctccaagcaacaacaacaacaaaaatatacctagatctaagtgtagagcaacaccacaagc 5269338  T
Q  187 atattcaaagcaacaaagataagaaa 212  Q
    ||| ||||||||| ||| ||||||||    
T  5269337 ataatcaaagcaataaatataagaaa 5269312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 4956027 - 4956157
Alignment:
Q  75 aataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagc 174  Q
    |||| ||||||||| ||||||||||| |||||| | ||||||||| || | | | |||| ||||||   |||||||  || |||||| ||||||||||||    
T  4956027 aatataacttagacatgtggagcaaaggaagtaataatcaatgagcaatgcagcctcaagcaacaa---caacaaacggatctagatttaagtgtgaagc 4956123  T
Q  175 aacaccacaagcatattcaaagcaacaaagataa 208  Q
    |||||||||| |||| ||||||||||| ||||||    
T  4956124 aacaccacaaacataatcaaagcaacacagataa 4956157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 10047233 - 10047351
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || |||||||  |||||| ||  ||| ||| |||| ||| |||||||| |||||||||||||  |||||||||||||||||    
T  10047233 gtgtggagcaaaggaagtggtaatcaatggataaagtgtctccaagcaataacaacaa-aaatagacatagatctaagtgtagagcaacaccacaagcat 10047331  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  10047332 aatcaaagcaataaagataa 10047351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 873713 - 873607
Alignment:
Q  136 aacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaatagaagaaaacaacaaacca 235  Q
    ||||||| |||||||  ||| || ||||||||||||| ||||||||||| |||||||||| |||| ||||||||||| || | ||| |||||||| ||||    
T  873713 aacaacaacaacaaactgacttaaatctaagtgtgaaacaacaccacaaacatattcaaaacaacgaagataagaaacaagataaggaaacaacacacca 873614  T
Q  236 gtattat 242  Q
     ||||||    
T  873613 atattat 873607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 16630923 - 16630805
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||| | || ||||||| ||||||| ||  ||| || ||||| ||| ||| | |||||||||||||||| ||||||||||||||||||    
T  16630923 gtgtggagcaaaggaactggtaatcaatgtgtaaagtgtctccaagcagcaacaacaa-aaacaaacctagatctaagtgtaaagcaacaccacaagcat 16630825  T
Q  189 attcaaagcaacaaagataag 209  Q
    | |||||| ||||||||||||    
T  16630824 aatcaaag-aacaaagataag 16630805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 25862265 - 25862146
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  25862265 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcat 25862167  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| |||||||||    
T  25862166 aatcaaagcaataaagataag 25862146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 18377241 - 18377348
Alignment:
Q  105 gtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaag 204  Q
    ||||| |||||||  |||||| || |||| |||||||| ||||||| || |||| | |||||||| |||||  |||||||||||| |||||||||||||     
T  18377241 gtagtaatcaatggataaagtgtcctcaagcaacaacaacaacaaacagtcctaaaactaagtgtaaagcataaccacaagcataatcaaagcaacaaaa 18377340  T
Q  205 ataagaaa 212  Q
    ||||||||    
T  18377341 ataagaaa 18377348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 240
Target Start/End: Complemental strand, 8114973 - 8114828
Alignment:
Q  92 tggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatatt 191  Q
    ||||| |||||||||||| ||||||||  |||||| |||||| |||| |||   | |||||||||||||||| | ||||||| ||||| | ||  |||||    
T  8114973 tggagtaaaagaagtagtaatcaatgaccaaagtaacatcaagcaaccaca---ataaatagacctagatctcaatgtgaagtaacacaataattatatt 8114877  T
Q  192 caaagcaacaaagataagaaagaatagaagaaaacaacaaaccagtatt 240  Q
     ||| ||||||| |||||| |||  |||||||||||||| |||| ||||    
T  8114876 taaaccaacaaaaataagacagatgagaagaaaacaacacaccaatatt 8114828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 34670863 - 34670784
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaa----gtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaa 212  Q
    |||||||| ||||||||| ||||||||||||    |||||||||  ||||| ||||||||||||||||||||||||||||||    
T  34670863 caacaacaacaacaaatatacctagatctaattaagtgtgaagc--caccaaaagcatattcaaagcaacaaagataagaaa 34670784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 16624252 - 16624144
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| |||||  | ||||||| ||||||| ||  ||| |||||||| ||| ||| |||||||||| |||||||  |||||||||||||| ||    
T  16624252 gtgtggagcaaaggaagtgataatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagacctagatttaagtgtagagcaacaccacaagaat 16624154  T
Q  189 attcaaagca 198  Q
    | ||||||||    
T  16624153 aatcaaagca 16624144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 38152619 - 38152563
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||| |||||||||||    
T  38152619 agacctagatctaagtgtatagcaacaccacaagcataatcaaagc-acaaagataag 38152563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 54867036 - 54867157
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaat-agacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| |||  |||| |||||||||||||  ||||||||||||||||    
T  54867036 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaaaaaaacagacatagatctaagtgtagagcaacaccacaagca 54867135  T
Q  188 tattcaaagcaacaaagataag 209  Q
    || |||||| || |||||||||    
T  54867136 taatcaaagtaataaagataag 54867157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 5143113 - 5143232
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  | ||||||||||| |||    
T  5143113 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaaacaacaacaacaa-aaacagacctaaatctaagtgtagaacaacaccacaaacat 5143211  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||| ||| | |||||||    
T  5143212 aatcaaaacaatagagataag 5143232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 39245847 - 39245967
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||||| || ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  |||||||||||| ||||    
T  39245847 gtgtggagcgaatgaagtggtaatcaatagataaagtgtctccaaacaacaacaacaaaaaacagacctaaatctaagtgtagagcaacaccacaggcat 39245946  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||| ||| |||||||||    
T  39245947 aatcaaaacaataaagataag 39245967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 42599762 - 42599698
Alignment:
Q  145 aacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    |||||| | |||||||||||| |||  |||||||||||||||||| ||||||||| |||||||||    
T  42599762 aacaaacaaacctagatctaaatgtagagcaacaccacaagcataatcaaagcaataaagataag 42599698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 3777417 - 3777522
Alignment:
Q  102 gaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaaca 201  Q
    ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| ||||||||||||||||||  | ||| |||||||||||| ||||||| |||    
T  3777417 gaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagacctagatctaagtgtagaacaaaaccacaagcataatcaaagc-aca 3777514  T
Q  202 aagataag 209  Q
    ||||||||    
T  3777515 aagataag 3777522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 24333664 - 24333782
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||||||||||||||  |||||   ||||||||    
T  24333664 gtgtggagcaaaaggaagtggtaatcaatagataaagtgtctccaaacaacaacaacaaaaaacagacctagatctaagtgtagagcaa---cacaagca 24333760  T
Q  188 tattcaaagcaacaaagataag 209  Q
    || ||||||||| |||||||||    
T  24333761 taatcaaagcaataaagataag 24333782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 3991945 - 3991991
Alignment:
Q  157 tagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaa 203  Q
    ||||||||||||||||||||||| ||||||||||| |||||| ||||    
T  3991945 tagatctaagtgtgaagcaacactacaagcatatttaaagcatcaaa 3991991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 1983542 - 1983429
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| |||||| | |||||||  ||||||    |||| |||||||| |||||||  ||| || |||||||||| ||||| |||||||| |||    
T  1983542 gtgtggagcaaaggaagtaataatcaatggataaagtgggttcaagcaacaacaacaacaaactgacttaaatctaagtgtaaagcatcaccacaaacat 1983443  T
Q  189 attcaaagcaacaa 202  Q
    | ||||| ||||||    
T  1983442 aatcaaaacaacaa 1983429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 5147531 - 5147650
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  |||  ||||||| ||| ||  ||||||| ||||||||||  ||||||||||||| |||    
T  5147531 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagaaacaacaacaataac-agacctaaatctaagtgtagagcaacaccacaaacat 5147629  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||| ||| | |||||||    
T  5147630 aatcaaaacaatagagataag 5147650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 215
Target Start/End: Complemental strand, 31985876 - 31985751
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||| ||||||| |||| || ||| ||| ||||||| ||  ||| |||||||| ||| ||| |||||||| |||| ||||  |||||| |||||||||    
T  31985876 gtgtggtgcaaaaggaagtggtaatctatgtgtaaagtgtctccaagcaacaacaacaaaaaacagacctag-tcta-gtgtagagcaactccacaagca 31985779  T
Q  188 tattcaaagcaacaaagataagaaagaa 215  Q
    ||| |||||||| ||||||||| |||||    
T  31985778 tatacaaagcaataaagataagcaagaa 31985751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 3677787 - 3677684
Alignment:
Q  79 aaacttagacgtgtggagcaaaa-gaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaac 177  Q
    ||||||||| ||||||||||||| |||||||| | |||| |  |||||| | |||| |||||||| |||    |||||||| |||||||||||||||||     
T  3677787 aaacttagatgtgtggagcaaaacgaagtagtaaccaataatcaaagtagcttcaagcaacaacaacaa----tagacctatatctaagtgtgaagcaaa 3677692  T
Q  178 accacaag 185  Q
    | ||||||    
T  3677691 aacacaag 3677684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 34842448 - 34842582
Alignment:
Q  79 aaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaaca 178  Q
    ||||||||| |||||||| ||| |||||||| ||||| |||||||||| | |||| || ||||| ||| ||| | |||||||||||||||||||||||||    
T  34842448 aaacttagatgtgtggagtaaaggaagtagtaatcaa-gagtaaagtagcctcaagcagcaacaacaataaacaaacctagatctaagtgtgaagcaaca 34842546  T
Q  179 ccacaagcatattcaaagcaacaaagataagaaaga 214  Q
    |||||||||||| | |||||||||||||||||||||    
T  34842547 ccacaagcatatccgaagcaacaaagataagaaaga 34842582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 30899697 - 30899850
Alignment:
Q  75 aataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaa---atagacctagatctaagtgtga 171  Q
    ||||||||||||| ||||||||| |||||| |||| ||||||||| |||||| | |||| |||||||| ||||||   ||||||||||||| |||||| |    
T  30899697 aataaaacttagatgtgtggagctaaagaaatagtaatcaatgagcaaagtagcctcaagcaacaacaacaacaacacatagacctagatcaaagtgtta 30899796  T
Q  172 agcaacaccacaagcatattcaaagcaacaaagataagaaagaatagaagaaaa 225  Q
    |||||||||||||| |||  |||| |||||||||||  |||||| |||||||||    
T  30899797 agcaacaccacaagtataaccaaaacaacaaagatacaaaagaagagaagaaaa 30899850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 78 - 240
Target Start/End: Original strand, 5610985 - 5611147
Alignment:
Q  78 aaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaac 177  Q
    |||||||||  | ||| |||||| |||||||| ||||||||||||||||   | || |||||| |  |||||| | ||||||||||||| ||||| ||||    
T  5610985 aaaacttaggtgagtgaagcaaatgaagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaaacctagatctaagagtgaaacaac 5611084  T
Q  178 accacaagcatattcaaagcaacaaagataagaaagaatagaagaaaacaacaaaccagtatt 240  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||||||||||| |||| ||||    
T  5611085 accataagaatattcaaagcaacaaagataagaaagaagggaagaaaacaacacaccaatatt 5611147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 14520083 - 14520201
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| ||||||||||||||||||  |||||||||||||||||    
T  14520083 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagacctagatctaagtgtagagcaacaccacaagcat 14520181  T
Q  189 attcaaagcaacaaagataag 209  Q
    |  |||||| |||||||||||    
T  14520182 aaacaaagc-acaaagataag 14520201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 3880156 - 3880273
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||   |||||| || |||||||||||||  ||||    |||||| |||||||||| |||||||||||||||||    
T  3880156 gtgtggagcaaaaggaagtggtaatcaatagataaagtgtcttcaatcaacaacaaaaaca----gacctaaatctaagtgtaaagcaacaccacaagca 3880251  T
Q  188 tattcaaagcaacaaagataag 209  Q
    || ||||||||| |||||||||    
T  3880252 taatcaaagcaataaagataag 3880273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 28832114 - 28832232
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || |||||||  |||||| || |||| |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  28832114 gtgtggagcaaaggaagtggtaatcaatggataaagtgtcttcaagcaacaacaacaa-aaacagaccta-atctaagtgtagagcaacaccacaagcat 28832211  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||| ||| |||||||||    
T  28832212 aatcaaatcaataaagataag 28832232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 2630130 - 2630223
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaatagaagaaaacaa 228  Q
    ||||||||  ||||||||| |||| |||||||||   |||||||||||||||||||| ||||||| | ||||||||| ||| |||| |||||||    
T  2630130 caacaacaaaaacaaataggcctaaatctaagtgcagagcaacaccacaagcatatttaaagcaatagagataagaaggaagagaataaaacaa 2630223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 17004203 - 17004084
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||| |||||||||| |||||||||||||||||    
T  17004203 gtgtggagcaaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa-aaacagacctaaatctaagtgt-aagcaacaccacaagca 17004106  T
Q  188 tattcaaagcaacaaagataag 209  Q
    || ||||||||| |||||||||    
T  17004105 taatcaaagcaaaaaagataag 17004084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 19588600 - 19588719
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||  ||  ||| |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  19588600 gtgtggagcaaaggaagtggtaatcaatagataaagcgtctccaagcaacaacaacaaaaaa-agacctaaatctaagtgtagagcaacaccacaagcat 19588698  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| |||||||||    
T  19588699 aatcaaagcaataaagataag 19588719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 12084357 - 12084301
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||| |||||||||||    
T  12084357 agacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataag 12084301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 24553748 - 24553630
Alignment:
Q  90 tgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcata 189  Q
    ||||||||||| |||||  | |||||||  |||||| ||  ||| ||||| || ||| ||| ||||||| ||||||||||  || |||||||||||||||    
T  24553748 tgtggagcaaaggaagtgataatcaatggataaagtgtctccaagcaacatcaacaa-aaacagacctaaatctaagtgtagagaaacaccacaagcata 24553650  T
Q  190 ttcaaagcaacaaagataag 209  Q
     ||||||||| |||||||||    
T  24553649 atcaaagcaataaagataag 24553630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 9353573 - 9353457
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || | ||||| ||||||| ||  ||| |||||||| ||| ||| |||||||| |||| ||||  |||||||||||||||||    
T  9353573 gtgtggagcaaaggaagtggtaaacaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagacctag-tcta-gtgtagagcaacaccacaagcat 9353477  T
Q  189 attcaaagcaacaaagataag 209  Q
    || ||||| ||||||||||||    
T  9353476 atacaaag-aacaaagataag 9353457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 11182005 - 11181956
Alignment:
Q  160 atctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    ||||||||||  ||||| |||||||||||| ||||||||| |||||||||    
T  11182005 atctaagtgtagagcaataccacaagcataatcaaagcaataaagataag 11181956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 36932593 - 36932475
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||  || ||||||| ||||||| ||  ||| |||||||| ||| ||| |||||||| |||| ||||  ||||||||||||||||    
T  36932593 gtgtggagcaaaaggaagaggtaatcaatgtgtaaagtgtctccaagcaacaacaacaaaaaacagacctag-tcta-gtgtagagcaacaccacaagca 36932496  T
Q  188 tattcaaagcaacaaagataag 209  Q
    ||  ||||| ||||||||||||    
T  36932495 taaacaaag-aacaaagataag 36932475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 42127652 - 42127534
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||||||||  |||| || |||||||  |||||| ||  ||| |||||||| |||  || |||| || |||||| |||  |||||||||||||||||    
T  42127652 gtgtggagcaaagaaagtggtaatcaatggataaagtgtctccaagcaacaacaacaa--aacagacttaaatctaattgtagagcaacaccacaagcat 42127555  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||| ||| |||||||||    
T  42127554 aatcaaaacaataaagataag 42127534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 2869938 - 2869818
Alignment:
Q  92 tggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaa---atagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||||| |||||||| |||||||||||||||| |||||| |||||||| ||||||   ||||||||| ||||||||||  |||||||||| ||||||    
T  2869938 tggagcaaaggaagtagtgatcaatgagtaaagtagcatcaaacaacaacaacaacaacaaatagacctaaatctaagtgtagagcaacaccataagcat 2869839  T
Q  189 attcaaagcaacaaagataag 209  Q
    |||||||||||||||||||||    
T  2869838 attcaaagcaacaaagataag 2869818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 249
Target Start/End: Complemental strand, 16388757 - 16388554
Alignment:
Q  48 ttgtgaattcagacaaataattataataataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaaca---acatc 144  Q
    ||||||||||| ||||||||| | |  |||||| |||||| |||||||||||||  |||||| ||||||||||||||||   |||| || ||   ||| |    
T  16388757 ttgtgaattcaaacaaataatcacatcaataaa-cttagatgtgtggagcaaaaatagtagtaatcaatgagtaaagtagtctcaagcagcagcaacaac 16388659  T
Q  145 aacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaatagaagaaaacaacaaaccagtattatct 244  Q
    |||||| |||||||||| || |||||||||||||| | |||||||| |||||||| |||||||||| ||||  || |||||||||| |||| |||| | |    
T  16388658 aacaaacagacctagatgtatgtgtgaagcaacactataagcatatccaaagcaataaagataagagagaaaggaggaaaacaacacaccaatattgttt 16388559  T
Q  245 accca 249  Q
    |||||    
T  16388558 accca 16388554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 28770972 - 28770887
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaatagaa 220  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| |||||| ||||    
T  28770972 caacaactacaacaaatagacctagatctaagtgtgaagcaacaccacaagcataatcaaagcaaaaaatataataaagaagagaa 28770887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 3277903 - 3277979
Alignment:
Q  136 aacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaa 212  Q
    ||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  3277903 aacaacaacaacaaatagatctagatctaagtgtgaagcaacactacaaacatattcaaagcaaaaaagataagaaa 3277979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 23078715 - 23078596
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| | ||||||||||||||||  |||||||||||||||||    
T  23078715 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaaaaaacatacctagatctaagtgtagagcaacaccacaagcat 23078616  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||| |||||||||||    
T  23078615 aatcaaagc-acaaagataag 23078596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 5699694 - 5699760
Alignment:
Q  144 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataaga 210  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| |||||||    
T  5699694 caacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagcagcaacgataaga 5699760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 33528864 - 33528746
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || |||||||  |||||| ||  ||| |||||||| ||| ||| |||||||||||||| |||  |||||||||||||||||    
T  33528864 gtgtggagcaaaggaagtggtaatcaatggataaagtgtccccaagcaacaacaacaa-aaacagacctagatctaaatgtagagcaacaccacaagcat 33528766  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  33528765 aatcaaagcaataaagataa 33528746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 34388713 - 34388830
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||  ||||||| || |||| |||||||| ||| ||| ||||||||||||||||||  ||||||||||||||||     
T  34388713 gtgtggagcaaaggaagtggtaatcaatatgtaaagtgtcttcaagcaacaacaacaa-aaacagacctagatctaagtgtagagcaacaccacaagcaa 34388811  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||| ||||||||||    
T  34388812 aatcaaagc-acaaagataa 34388830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 8039913 - 8040033
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||   |||||| || |||| |||||||| ||| ||| ||||||| ||||||||||  ||||||||||||||||    
T  8039913 gtgtggagcaaaaggaagtggtaatcaatagataaagtgtcttcaagcaacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagca 8040011  T
Q  188 tattcaaagcaacaaagataag 209  Q
    || ||||||||| |||||||||    
T  8040012 taatcaaagcaataaagataag 8040033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 10445689 - 10445568
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || |||||||  |||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  ||||| ||||||||||    
T  10445689 gtgtggagcaaaaggaagtggtaatcaatggataaagtgtctccaagcaacaacaacaaaaaacagacctaaatctaagtgtagagcaaaaccacaagca 10445590  T
Q  188 tattcaaagcaacaaagataag 209  Q
    || ||||||||| |||||||||    
T  10445589 taatcaaagcaataaagataag 10445568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 10707496 - 10707376
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaa-tagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| || ||||||||||||||||  ||||||||  ||||||    
T  10707496 gtgtggagcaaaagaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaagaaaatatacctagatctaagtgtagagcaacactgcaagca 10707397  T
Q  188 tattcaaagcaacaaagataag 209  Q
    || ||||||| |||||||||||    
T  10707396 taatcaaagc-acaaagataag 10707376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 18674598 - 18674521
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaa 212  Q
    ||||||||  |||||| |||||||||| ||||||||||| |||||||| ||||||||| || ||||||||||||||||    
T  18674598 caacaacaataacaaacagacctagatttaagtgtgaagtaacaccacgagcatattcgaaacaacaaagataagaaa 18674521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 31055896 - 31056015
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  31055896 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcat 31055994  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| |||||||||    
T  31055995 aatcaaagcaataaagataag 31056015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 20522074 - 20522196
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||| ||| ||||| || |||||||  |||||| ||  ||| ||| |||| ||| ||| |||| |||||||||||||  |||||||||||||||||    
T  20522074 gtgtggagaaaaggaagtggtaatcaatggataaagtgtctccaagcaaaaacaacaaaaaa-agacatagatctaagtgtagagcaacaccacaagcat 20522172  T
Q  189 attcaaagcaacaaagataagaaa 212  Q
    | ||||||||| ||||||||||||    
T  20522173 aatcaaagcaataaagataagaaa 20522196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 27149109 - 27149002
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaa-atagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    ||||||||||||  ||||  | |||||||||||||||| |||||| |||||||| ||| || ||||| ||| |||||  ||| |||||||||||||||||    
T  27149109 gtgtggagcaaagaaagtgataatcaatgagtaaagtagcatcaagcaacaacaacaataacatagatctaaatctatttgtaaagcaacaccacaagca 27149010  T
Q  188 tattcaaa 195  Q
    ||||||||    
T  27149009 tattcaaa 27149002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 40014785 - 40014902
Alignment:
Q  92 tggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatatt 191  Q
    ||||||||| |||||||| |||||||   ||||| || |||| |||||||| ||||||| || |||| | |||||||| || || ||||||||||||| |    
T  40014785 tggagcaaaggaagtagtaatcaatgg--aaagtgtcctcaagcaacaacaacaacaaacagtcctaaaactaagtgtaaaacatcaccacaagcataat 40014882  T
Q  192 caaagcaacaaagataagaaa 212  Q
    ||||||||| |||||||||||    
T  40014883 caaagcaac-aagataagaaa 40014902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 17865057 - 17865175
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||| ||| ||||| || |||||||  |||| | ||  ||| |||||||| ||| ||| | ||||||||||||||||  |||||||||||||||||    
T  17865057 gtgtggagaaaaggaagtggtaatcaatggataaaatgtctccaaccaacaacaacaa-aaacatacctagatctaagtgtagagcaacaccacaagcat 17865155  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  17865156 aatcaaagcaataaagataa 17865175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 8390347 - 8390274
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    |||||||| ||| ||  ||||||||||||||||||  |||||||||||||||||| ||||||| |||||||||||    
T  8390347 caacaacaacaaaaaccagacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataag 8390274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 34393347 - 34393405
Alignment:
Q  157 tagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaa 215  Q
    ||||| ||||||| ||||| || |||||||| |||||||||||||||||||||||||||    
T  34393347 tagatttaagtgttaagcagcagcacaagcacattcaaagcaacaaagataagaaagaa 34393405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 39532835 - 39532909
Alignment:
Q  138 caacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaa 212  Q
    ||||| ||| ||||||||||| ||||||||| ||||||||||||||| ||||  | |||||| ||||||||||||    
T  39532835 caacaacaataaatagacctaaatctaagtgcgaagcaacaccacaaacataacctaagcaataaagataagaaa 39532909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 16940452 - 16940333
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaat-caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||| ||||| || |||||||| |||||| || || || |||||||| ||| ||| |||||||||||||||||   ||| |||||| |||||    
T  16940452 gtgtggagcaaaggaagtggtaatcaatgaataaagtgtc-tctatgcaacaacaacaa-aaacagacctagatctaagtgcagagcgacaccaaaagca 16940355  T
Q  188 tattcaaagcaacaaagataag 209  Q
    || ||||||||| |||||||||    
T  16940354 taatcaaagcaataaagataag 16940333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 17011117 - 17010998
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaat-caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||| ||||| || |||||||| |||||| || || || |||||||| ||| ||| |||||||||||||||||   ||| |||||| |||||    
T  17011117 gtgtggagcaaaggaagtggtaatcaatgaataaagtgtc-tctatgcaacaacaacaa-aaacagacctagatctaagtgcagagcgacaccaaaagca 17011020  T
Q  188 tattcaaagcaacaaagataag 209  Q
    || ||||||||| |||||||||    
T  17011019 taatcaaagcaataaagataag 17010998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 12632456 - 12632524
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaa 203  Q
    ||||||||  |||||| |||||||||| ||||||| ||||||||||||||||||||  |||| ||||||    
T  12632456 caacaacaataacaaacagacctagatataagtgtcaagcaacaccacaagcatatctaaaggaacaaa 12632524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 16388291 - 16388399
Alignment:
Q  79 aaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaaca 178  Q
    ||||||||| ||||||||||||  ||||||| |||||||| |||||||   |||| || ||||| ||||||| | || || || |||||||||| |||||    
T  16388291 aaacttagatgtgtggagcaaagaaagtagtaatcaatgaataaagtagtctcaagcagcaacaacaacaaacaaacatatatataagtgtgaaacaaca 16388390  T
Q  179 ccacaagca 187  Q
    | |||||||    
T  16388391 ctacaagca 16388399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 33117990 - 33118109
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||| |||| ||||| || ||||||   |||||| || |||| || ||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  33117990 gtgtggatcaaaggaagtggtaatcaatagataaagtgtcttcaaacatcaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcat 33118088  T
Q  189 attcaaagcaacaaagataag 209  Q
    | |||||| || |||||||||    
T  33118089 aatcaaagtaataaagataag 33118109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 42039912 - 42039795
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| | |||||||| |||||||  |||||||||||||||||    
T  42039912 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacatacctagat-taagtgtagagcaacaccacaagcat 42039815  T
Q  189 attcaaagcaacaaagataag 209  Q
    |  |||||| |||||||||||    
T  42039814 aaacaaagc-acaaagataag 42039795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 13569182 - 13569300
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||| ||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| || | ||||||||||| |  || ||||||||||||||    
T  13569182 gtgtggagtaaaggaagtggtaatcaatgtgtaaagtgtctccaaacaacaacaacaaaaaacaggcttagatctaagtatagagaaacaccacaagcat 13569281  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||| ||||||||||    
T  13569282 aatcaaagc-acaaagataa 13569300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 14699241 - 14699128
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatag---acctagatctaagtgtgaagcaacaccacaag 185  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||||||| ||   ||||| ||||||||||  ||||||||||||||    
T  14699241 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaacaaaaagcagacctaaatctaagtgtagagcaacaccacaag 14699142  T
Q  186 catattcaaagcaa 199  Q
    |||| |||||||||    
T  14699141 cataatcaaagcaa 14699128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 36758004 - 36757888
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||  ||| ||||||||| || |||||  |||||||||||||||||    
T  36758004 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaaca--aaacagacctaga-cttagtgtagagcaacaccacaagcat 36757908  T
Q  189 attcaaagcaacaaagataag 209  Q
    |  |||||| |||||||||||    
T  36757907 aaacaaagc-acaaagataag 36757888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 39482830 - 39482903
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    |||||||| ||| ||| ||||||| ||||||||||  | ||||||||||||||||  |||||||| ||||||||    
T  39482830 caacaacaacaaaaaacagacctaaatctaagtgtagaacaacaccacaagcataaccaaagcaataaagataa 39482903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 28771056 - 28770997
Alignment:
Q  60 acaaataattataataataaaacttagacgtgtggagcaaaagaagtagtcatcaatgag 119  Q
    ||||||||| |||  ||||||| |||||||||||| ||||| |||||||| |||||||||    
T  28771056 acaaataatcatatcaataaaatttagacgtgtggtgcaaatgaagtagtaatcaatgag 28770997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 34682578 - 34682472
Alignment:
Q  89 gtgtggagcaaaagaa-gtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||||| || || ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  ||||||||||||||||    
T  34682578 gtgtggagcaaaagaaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagca 34682480  T
Q  188 tattcaaa 195  Q
    || |||||    
T  34682479 taatcaaa 34682472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 78 - 240
Target Start/End: Original strand, 21156272 - 21156434
Alignment:
Q  78 aaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaac 177  Q
    |||||||||  | ||| |||||| |||||||| ||||||||||||||||   | || |||||| |  |||||| | ||||||||||||| ||||| ||||    
T  21156272 aaaacttaggtgagtgaagcaaatgaagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaaacctagatctaagagtgaaacaac 21156371  T
Q  178 accacaagcatattcaaagcaacaaagataagaaagaatagaagaaaacaacaaaccagtatt 240  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||||||||||| |||| ||||    
T  21156372 accataagaatattcaaagcaacaaagataagaaagaagggaagaaaacaacacaccaatatt 21156434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 235
Target Start/End: Original strand, 25516848 - 25516981
Alignment:
Q  103 aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaa 202  Q
    ||||||| |||||| |||||||||   ||||  ||||||| ||| |||||||| |||||| ||||||||| ||||||||||| |||||| |||| |||||    
T  25516848 aagtagtaatcaataagtaaagtagtctcaaataacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaaacatatttaaagtaacaa 25516947  T
Q  203 agataagaaagaataga-agaaaacaacaaacca 235  Q
     |||||||||||| |||  |||||||||| ||||    
T  25516948 ggataagaaagaagagagggaaaacaacacacca 25516981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 209
Target Start/End: Original strand, 27038135 - 27038262
Alignment:
Q  80 aacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacac 179  Q
    |||| ||| |||||||||||| ||| | || ||||||| ||||||| || |||| |||||||| ||| ||| ||| ||||||||||||||  ||||||||    
T  27038135 aactaagatgtgtggagcaaatgaaatggtaatcaatgtgtaaagtgtcttcaagcaacaacaacaa-aaacagatctagatctaagtgtagagcaacac 27038233  T
Q  180 cacaagcatattcaaagcaacaaagataag 209  Q
    |||||||||| ||||||| |||||||||||    
T  27038234 cacaagcataatcaaagc-acaaagataag 27038262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 8370720 - 8370602
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||| ||| ||||  || ||||||| ||||||| ||  ||| |||||||| ||| ||| ||||||||||||||||||  |||||||||||||||||    
T  8370720 gtgtggagtaaaggaagaggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagacctagatctaagtgtagagcaacaccacaagcat 8370622  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||| |||||||||||    
T  8370621 aatcaaagc-acaaagataag 8370602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 27026799 - 27026917
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||| | || ||||||| ||||||| ||  ||| ||||||||  || ||| ||||||||||||||||||  |||||||||||||||||    
T  27026799 gtgtggagcaaatgaaatggtaatcaatgtgtaaagtgtctccaagcaacaacaagaa-aaacagacctagatctaagtgtagagcaacaccacaagcat 27026897  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||| |||||||||||    
T  27026898 aatcaaagc-acaaagataag 27026917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 30710024 - 30709906
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| |||||||||||||||| |  |||||||||| ||||||    
T  30710024 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagacctagatctaagtttagagcaacaccataagcat 30709926  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||| |||||||||||    
T  30709925 aatcaaagc-acaaagataag 30709906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 48438068 - 48438186
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||| | || ||||||   |||||||||  ||| |||||||| ||| ||| ||||||||||||||||||  |||||||||||||||||    
T  48438068 gtgtggagcaaaggaaatggtaatcaatagataaagtatctccaagcaacaacaacaa-aaacagacctagatctaagtgtagagcaacaccacaagcat 48438166  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||| ||| ||||||||    
T  48438167 aatcaaaacaataaagataa 48438186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 27986675 - 27986554
Alignment:
Q  92 tggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatat 190  Q
    ||||||||||| |||| || ||| ||| ||||||| || |||| |||||||| ||| |||||||||||| |||| ||||  |||||||||||||||||||    
T  27986675 tggagcaaaaggaagtggtaatctatgtgtaaagtgtcttcaagcaacaacaacaa-aaatagacctag-tcta-gtgtagagcaacaccacaagcatat 27986579  T
Q  191 tcaaagcaacaaagataagaaagaa 215  Q
     |||||||| ||||||||| |||||    
T  27986578 acaaagcaataaagataagcaagaa 27986554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 36028959 - 36029058
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| |||||||||||||||| |  |||||||||||||||||    
T  36028959 gtgtggagcaaatgaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagacctagatctaagtatagagcaacaccacaagcat 36029057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 40593016 - 40592897
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || |||||||  |||| | ||  ||| |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  40593016 gtgtggagcaaaggaagtggtaatcaatggataaaatgtctccaagcaacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcat 40592918  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| | |||||||    
T  40592917 aatcaaagcaatatagataag 40592897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 208
Target Start/End: Original strand, 16264199 - 16264320
Alignment:
Q  85 agacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaa 184  Q
    ||||||||||||||| |||||| || ||||||| ||||||| ||  |||  ||||||| ||| ||| |  |||||||||||||||  |||||||||||||    
T  16264199 agacgtgtggagcaacagaagtggtaatcaatgtgtaaagtgtctccaagaaacaacaacaa-aaacaatcctagatctaagtgtagagcaacaccacaa 16264297  T
Q  185 gcatattcaaagcaacaaagataa 208  Q
     |||| ||||||| ||||||||||    
T  16264298 acataatcaaagc-acaaagataa 16264320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 25929611 - 25929552
Alignment:
Q  154 acctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaag 213  Q
    ||||| ||||||||||  ||||||||||||| |||| |||||||||||||||||||||||    
T  25929611 acctaaatctaagtgtagagcaacaccacaaacataatcaaagcaacaaagataagaaag 25929552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 26298888 - 26298961
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||| ||||||||| |||||||||    
T  26298888 caacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataag 26298961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 29100026 - 29100147
Alignment:
Q  91 gtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatat 190  Q
    |||||||||| |||||||| ||||||||||| | ||   |||| ||||||||   |||||  ||  ||||||||| ||||||| |||||||||| |||||    
T  29100026 gtggagcaaaggaagtagtaatcaatgagtagaatagtctcaagcaacaaca---acaaactgagatagatctaactgtgaagaaacaccacaaacatat 29100122  T
Q  191 tcaaagcaacaaagataagaaagaa 215  Q
    ||||||||| |||||  ||||||||    
T  29100123 tcaaagcaagaaagaagagaaagaa 29100147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 220
Target Start/End: Original strand, 34482048 - 34482185
Alignment:
Q  82 cttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacacca 181  Q
    |||||| |||||| ||||| |||| | | ||||||||| ||||||   |||| ||||| || ||||||| ||||||||||| |||||||||| |||||||    
T  34482048 cttagatgtgtggggcaaaggaagga-taatcaatgagcaaagtagtttcaagcaacatcaacaacaaacagacctagatcaaagtgtgaagtaacacca 34482146  T
Q  182 caagcatattcaaagcaacaaagataagaaagaatagaa 220  Q
    |   ||||  ||||||||| |||||||||| ||| ||||    
T  34482147 cgtacataaccaaagcaaccaagataagaaggaaaagaa 34482185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 3328527 - 3328470
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    ||||||| ||||||||||  |||||||||||||||||| ||||| ||| |||||||||    
T  3328527 agacctaaatctaagtgtagagcaacaccacaagcataatcaaaacaataaagataag 3328470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 1309709 - 1309833
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||| ||| ||||||| || |||| |||||||| ||| ||| || ||||| |||| ||||  ||||||||||||||||    
T  1309709 gtgtggagcaaaaggaagtggtaatctatgtgtaaagtgtcttcaagcaacaacaacaa-aaacagccctag-tcta-gtgtagagcaacaccacaagca 1309805  T
Q  188 tattcaaagcaacaaagataagaaagaa 215  Q
     || ||||||||| |||||||| |||||    
T  1309806 aatacaaagcaaccaagataagcaagaa 1309833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 32143176 - 32143300
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||| ||| ||||||| ||  ||| |||||||| ||| ||| |||||||| |||| ||||  ||||||||||||||||    
T  32143176 gtgtggagcaaaaggaagtggtaatctatgtgtaaagtgtctccaagcaacaacaacaa-aaacagacctag-tcta-gtgtagagcaacaccacaagca 32143272  T
Q  188 tattcaaagcaacaaagataagaaagaa 215  Q
     || |||||||| ||||||||| |||||    
T  32143273 aatacaaagcaataaagataagcaagaa 32143300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 35925398 - 35925441
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaa 195  Q
    ||||||||||||||||||  |||||||||||||||||| |||||    
T  35925398 agacctagatctaagtgtagagcaacaccacaagcataatcaaa 35925441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 1417722 - 1417604
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| || |||| |||||||| ||  ||| | || || ||||||||||  || |||| |||||||||    
T  1417722 gtgtggagcaaaggaagtggtaatcaatagataaagtgtcttcaagcaacaacaaca--aaacatacataaatctaagtgtagagtaacatcacaagcat 1417625  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| |||||||||    
T  1417624 aatcaaagcaataaagataag 1417604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 3716236 - 3716116
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||   |||||| ||  ||| |||||||| ||| ||| |||| || ||||||||||  ||||||||||||||||    
T  3716236 gtgtggagcaaaaggaagtggtaatcaatagataaagtgtctacaagcaacaacaacaa-aaacagacataaatctaagtgtagagcaacaccacaagca 3716138  T
Q  188 tattcaaagcaacaaagataag 209  Q
    || ||| | ||| |||||||||    
T  3716137 taatcacaacaataaagataag 3716116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 39040224 - 39040108
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||| |||| ||||| || ||||||| ||||||| ||  ||| |||||||| |||  || ||||||||| || |||||  |||||||||||||||||    
T  39040224 gtgtggaacaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa--aacagacctaga-cttagtgtagagcaacaccacaagcat 39040128  T
Q  189 attcaaagcaacaaagataag 209  Q
    |  |||||| |||||||||||    
T  39040127 aaacaaagc-acaaagataag 39040108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 18553046 - 18552998
Alignment:
Q  160 atctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||||||  ||||||||||||| |||| ||||||||| ||||||||    
T  18553046 atctaagtgtagagcaacaccacaaacataatcaaagcaataaagataa 18552998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 47924043 - 47924007
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||||||||||||||  |||||||||||||||||    
T  47924043 agacctagatctaagtgtagagcaacaccacaagcat 47924007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 228
Target Start/End: Complemental strand, 28617471 - 28617330
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaa-tagacctagatctaagtgtgaa-gcaacaccacaagc 186  Q
    |||||||||||| ||||| || |||||||||||||||| | ||||  ||||| | ||||||| ||||||||  ||| || || || ||||||||||||||    
T  28617471 gtgtggagcaaaggaagtggtaatcaatgagtaaagtagcctcaagaaacaagaacaacaaaatagacctaagtcttagagtaaaagcaacaccacaagc 28617372  T
Q  187 atattcaaagcaacaaagataagaaagaatagaagaaaacaa 228  Q
    ||||||||||||||||||||||| |||||  |||||||||||    
T  28617371 atattcaaagcaacaaagataagcaagaaaggaagaaaacaa 28617330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 20283943 - 20284065
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||||||||||||||  | |||||||  |||||| ||  |||  ||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  20283943 gtgtggagcaaaagaagtgataatcaatggataaagtgtctccaagaaacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcat 20284041  T
Q  189 attcaaagcaacaaagataagaaa 212  Q
    | ||||||||| ||||||||||||    
T  20284042 aatcaaagcaataaagataagaaa 20284065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 9185406 - 9185287
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||| ||||||| ||  ||| |||||||| |||  || ||||||||||||||||||  || |||||||||||||    
T  9185406 gtgtggagcaaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa--aacagacctagatctaagtgtagagaaacaccacaagca 9185309  T
Q  188 tattcaaagcaacaaagataag 209  Q
    ||  |||||||| |||||||||    
T  9185308 taaacaaagcaataaagataag 9185287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 9190251 - 9190132
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||| ||||||| ||  ||| |||||||| |||  || | ||||||||||||||||  ||||||||||||||||    
T  9190251 gtgtggagcaaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa--aacaaacctagatctaagtgtagagcaacaccacaagca 9190154  T
Q  188 tattcaaagcaacaaagataag 209  Q
    ||  |||||||| |||||||||    
T  9190153 taaacaaagcaataaagataag 9190132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 9235800 - 9235679
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaat-agacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||| ||||| || |||||||  |||||| ||  ||| |||||||| ||| |||  ||||||| |||||| |||  ||||||||||||||||    
T  9235800 gtgtggagcaaaggaagtggtaatcaatggataaagtgtctccaagcaacaacaacaaaaaaacagacctaaatctaaatgtagagcaacaccacaagca 9235701  T
Q  188 tattcaaagcaacaaagataag 209  Q
    || ||||||||| |||||||||    
T  9235700 taatcaaagcaataaagataag 9235679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 2647940 - 2647820
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||| | || ||||||   |||| ||||  ||| |||||||| ||| ||| ||||||| |||||||| |  |||||||||||||||||    
T  2647940 gtgtggagcaaaggaaatggtaatcaatagataaaatatctccaaacaacaacaacaaaaaacagacctaaatctaagtttagagcaacaccacaagcat 2647841  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| |||||||||    
T  2647840 aatcaaagcaataaagataag 2647820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 49091516 - 49091634
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| |||||||||| |||||||  |||||||||||||||||    
T  49091516 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa-aaacagacctagatttaagtgtagagcaacaccacaagcat 49091614  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||| |||||||||||    
T  49091615 aatcaaagc-acaaagataag 49091634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 4796913 - 4796791
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaata--gacctagatctaagtgtgaagcaacaccacaagc 186  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| |  |||||| ||||||||||  |||||||||||||||    
T  4796913 gtgtggagcaaaggaagtggtaatcaatagataaagtttctccaagcaacaacaacaaaaaaaacagacctaaatctaagtgtagagcaacaccacaagc 4796814  T
Q  187 atattcaaagcaacaaagataag 209  Q
    ||| ||||||||| |||||||||    
T  4796813 ataatcaaagcaataaagataag 4796791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 46516554 - 46516435
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| |||| || |||||||||| ||||||||||| ||||||    
T  46516554 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaaacaacaacaacaaaaaacagacttaaatctaagtgtaaagcaacaccaaaagcat 46516455  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| | ||||||    
T  46516454 aatcaaagcaatagagataa 46516435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 29159703 - 29159776
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||| ||||||||| |||||||||    
T  29159703 caacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataag 29159776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 21988760 - 21988880
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||| ||| |||||||| |||     ||||||| ||||  ||||  ||||||||||||| |||    
T  21988760 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtcaccaagcaacaacaacaaactccagacctaaatctgggtgtagagcaacaccacaaacat 21988859  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| |||||||||    
T  21988860 aatcaaagcaataaagataag 21988880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 761109 - 761155
Alignment:
Q  169 tgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaa 215  Q
    ||||||||||| | || ||||||||||||||||||||||||||||||    
T  761109 tgaagcaacactagaaacatattcaaagcaacaaagataagaaagaa 761155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 55864 - 55920
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    |||||||||||||||| |  |||||||||||||||||| ||||||| |||||||||||    
T  55864 agacctagatctaagtatagagcaacaccacaagcataatcaaagc-acaaagataag 55920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 2479193 - 2479309
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||   || |||||||| ||| ||| |||||||| ||| |||||  |||||||||||||||||    
T  2479193 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctctaagcaacaacaacaa-aaacagacctag-tct-agtgtagagcaacaccacaagcat 2479289  T
Q  189 attcaaagcaacaaagataag 209  Q
    || ||||| ||||||||||||    
T  2479290 atacaaag-aacaaagataag 2479309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 23403256 - 23403137
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| |||||  | |||||||  |||||| |   ||| |||||||| ||| ||| ||||||| || |||||||  |||||||||||||||||    
T  23403256 gtgtggagcaaaggaagtgataatcaatggataaagtgtttccaagcaacaacaacaa-aaacagacctaaatgtaagtgtagagcaacaccacaagcat 23403158  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| ||| |||||    
T  23403157 aatcaaagcaataaatataag 23403137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 27984411 - 27984461
Alignment:
Q  160 atctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataaga 210  Q
    ||||||||||||||||| | ||||| |||||| |||| |||||||||||||    
T  27984411 atctaagtgtgaagcaataacacaaacatatttaaagaaacaaagataaga 27984461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 21983139 - 21983256
Alignment:
Q  92 tggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatatt 191  Q
    ||||||||| ||||| || ||||||| ||||||||||  ||| |||||||| |||     ||||||| ||||  ||||  ||||||||||||| |||| |    
T  21983139 tggagcaaatgaagtggtaatcaatgtgtaaagtatctccaagcaacaacaacaaactccagacctaaatctgggtgtagagcaacaccacaaacataat 21983238  T
Q  192 caaagcaacaaagataag 209  Q
    |||||||| | |||||||    
T  21983239 caaagcaatagagataag 21983256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 8140992 - 8140952
Alignment:
Q  75 aataaaacttagacgtgtggagcaaaagaagtagtcatcaa 115  Q
    ||||||||| ||| ||||||||||||||||||||| |||||    
T  8140992 aataaaactaagatgtgtggagcaaaagaagtagtaatcaa 8140952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 29651664 - 29651784
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || |||||||| |||||| ||   ||||||||||| ||| ||| |||| |||||||||||||  |||||||||||||||||    
T  29651664 gtgtggagcaaaggaagtggtaatcaatgaataaagtgtctataatcaacaacaacaaaaaacagacttagatctaagtgtagagcaacaccacaagcat 29651763  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| |||||||||    
T  29651764 aatcaaagcaataaagataag 29651784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 48382667 - 48382607
Alignment:
Q  148 aaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  48382667 aaatagacctagatctaagtgtgaagcaacaccacaaacataattaaagcaacaaagataa 48382607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 32737236 - 32737109
Alignment:
Q  91 gtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatat 190  Q
    |||||||||| ||||| || ||||||||| |||||| | |||| |||||||| | |  || |||| ||||||||||||||||||||||||||||  |||     
T  32737236 gtggagcaaaggaagtggtgatcaatgagcaaagtagcctcaagcaacaacaacga--aacagacttagatctaagtgtgaagcaacaccacaaatataa 32737139  T
Q  191 tcaaagcaacaaagataagaaagaatagaa 220  Q
    ||||||| |||| || ||||||||| ||||    
T  32737138 tcaaagctacaatgaaaagaaagaagagaa 32737109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 40816976 - 40816856
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  ||||||||||| |||||    
T  40816976 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaaaaaacagacctaaatctaagtgtagagcaacaccacgagcat 40816877  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| |||||||||    
T  40816876 aatcaaagcaataaagataag 40816856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 775526 - 775645
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || | ||||   |||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  775526 gtgtggagcaaaggaagtggtaaccaatagataaagtgtctccaagcaacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcat 775624  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| |||||||||    
T  775625 aatcaaagcaataaagataag 775645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 2210358 - 2210451
Alignment:
Q  145 aacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaatagaagaaaacaacaaaccagtatt 240  Q
    ||||||| || ||||||||||||||||||||||| |  ||| |||  ||||||||| |||||||||||||| |||  |||||||||||||| ||||    
T  2210358 aacaaatcgatctagatctaagtgtgaagcaacatcgtaagtataaccaaagcaaccaagataagaaagaagaga--aaaacaacaaaccaatatt 2210451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 21536812 - 21536695
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  |||||||||||| ||| ||||||||||||| || | |||  |||||||||||||||||    
T  21536812 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaatcaacaacaacaa-aaatagacctaga-cttactgtagagcaacaccacaagcat 21536715  T
Q  189 attcaaagcaacaaagataag 209  Q
    |  |||||| |||||||||||    
T  21536714 agacaaagc-acaaagataag 21536695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 13598250 - 13598371
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaata--gacctagatctaagtgtgaagcaacaccacaagc 186  Q
    |||||||| ||| ||||| || |||||| ||| |||| ||  ||| |||||||| ||||||| |  |||||||||||||||||  || ||||||||||||    
T  13598250 gtgtggagtaaaggaagtggtaatcaat-agttaagtgtctccaaacaacaacaacaacaaaaacagacctagatctaagtgtagagaaacaccacaagc 13598348  T
Q  187 atattcaaagcaacaaagataag 209  Q
    ||| ||||||||| |||||||||    
T  13598349 ataatcaaagcaataaagataag 13598371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 35109724 - 35109638
Alignment:
Q  144 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaatagaagaaaacaaca 230  Q
    ||||||| ||||||||||||||||| | | ||||||||||| |||| | |||| |||||||| ||||||||| ||||  ||||||||    
T  35109724 caacaaacagacctagatctaagtgcggaacaacaccacaaacataattaaagaaacaaagagaagaaagaagagaaagaaacaaca 35109638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 9024021 - 9023952
Alignment:
Q  144 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaag 213  Q
    ||||||| | ||||| ||||||||||  |||||||||||||||||| |||| |||| |||||||||||||    
T  9024021 caacaaacatacctaaatctaagtgtatagcaacaccacaagcataatcaatgcaataaagataagaaag 9023952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 27104553 - 27104496
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    ||||||| ||||||||||  |||||||||||||||||| ||||||||| |||||||||    
T  27104553 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataag 27104496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 47103087 - 47102965
Alignment:
Q  85 agacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaa 184  Q
    |||||||||||||||| ||||| || ||||||   |||||| ||   || |||||||| |||  || ||||||| ||||||||||  |||||||||||||    
T  47103087 agacgtgtggagcaaatgaagtggtaatcaatagataaagtgtctcaaagcaacaacaacaa--aacagacctaaatctaagtgtagagcaacaccacaa 47102990  T
Q  185 gcatattcaaagcaacaaagataag 209  Q
    | ||| ||||||||| |||||||||    
T  47102989 gtataatcaaagcaataaagataag 47102965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 47704181 - 47704060
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||   |||||| ||  ||| || ||||| ||| ||||||||||| ||||||||||  ||||||||||||||      
T  47704181 gtgtggagcaaaaggaagtggtaatcaatagataaagtgtctccaagcagcaacaacaaaaaatagacctaaatctaagtgtagagcaacaccacaagtt 47704082  T
Q  188 tattcaaagcaacaaagataag 209  Q
    || ||||||||| |||||||||    
T  47704081 taatcaaagcaataaagataag 47704060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 215
Target Start/End: Original strand, 8281135 - 8281296
Alignment:
Q  48 ttgtgaattcagacaaataattataataataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaac 147  Q
    ||||||||||| || |||||| |||  |||| |||||||| |||| ||  ||| ||| |||| |||||||| |||||||   |||| ||||||||         
T  8281135 ttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaaatagtaatcaatgaataaagtagtctcaagcaacaaca----- 8281229  T
Q  148 aaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaa 215  Q
     || |||||||||||||||| |||||||||| || |  |||| ||||||||||| ||||||| |||||    
T  8281230 -aacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacagagataagcaagaa 8281296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 16124760 - 16124641
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||| |||||| ||||| || |||||||| |||| | |   ||| |||||||| ||| ||| |||||||||||||| |||  ||||||||||||| |||    
T  16124760 gtgtgaagcaaaggaagtggtaatcaatgaataaaatgtgtccaagcaacaacaacaa-aaacagacctagatctaaatgtagagcaacaccacaaacat 16124662  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| |||||||||    
T  16124661 aatcaaagcaataaagataag 16124641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 19072781 - 19072900
Alignment:
Q  90 tgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcata 189  Q
    |||||| |||| |||||||| ||||||   |||||| ||   || |||||||| ||| ||  ||||||| ||||||||||  ||||||||||||||||||    
T  19072781 tgtggaacaaaggaagtagtaatcaatagataaagtgtctcgaagcaacaacaacaaaaatcagacctaaatctaagtgtagagcaacaccacaagcata 19072880  T
Q  190 ttcaaagcaacaaagataag 209  Q
     ||||| ||| |||||||||    
T  19072881 atcaaaacaataaagataag 19072900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 19120671 - 19120790
Alignment:
Q  90 tgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcata 189  Q
    |||||| |||| |||||||| ||||||   |||||| ||   || |||||||| ||| ||  ||||||| ||||||||||  ||||||||||||||||||    
T  19120671 tgtggaacaaaggaagtagtaatcaatagataaagtgtctcgaagcaacaacaacaaaaatcagacctaaatctaagtgtagagcaacaccacaagcata 19120770  T
Q  190 ttcaaagcaacaaagataag 209  Q
     ||||| ||| |||||||||    
T  19120771 atcaaaacaataaagataag 19120790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 47099005 - 47098948
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    ||||||| ||||||||||  |||||||||||||| ||| ||||||||| |||||||||    
T  47099005 agacctaaatctaagtgtagagcaacaccacaagtataatcaaagcaataaagataag 47098948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 10996862 - 10996926
Alignment:
Q  144 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    |||||||||| |||| |  ||||||||||||||||||||| ||| ||||| |||||| |||||||    
T  10996862 caacaaatagtcctaaaattaagtgtgaagcaacaccacatgcagattcatagcaacgaagataa 10996926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 26645140 - 26645023
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| || | || |||||||| ||| ||  ||||||||| || |||||  |||||||||||||||||    
T  26645140 gtgtggagcaaatgaagtggtaatcaatgtgtaaagtgtctttaagcaacaacaacaa-aagcagacctaga-cttagtgtagagcaacaccacaagcat 26645043  T
Q  189 attcaaagcaacaaagataag 209  Q
    |  |||||| |||||||||||    
T  26645042 aaacaaagc-acaaagataag 26645023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 241
Target Start/End: Complemental strand, 33721800 - 33721650
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||| |||| |||||||| ||| ||||||||||||   |||| ||||||||   ||||| |  |||||||||||||||||| || |||||||| |||    
T  33721800 gtgtggaacaaaggaagtagtaatcgatgagtaaagtagtttcaagcaacaaca---acaaacatccctagatctaagtgtgaaacatcaccacaaacat 33721704  T
Q  189 attcaaagcaacaaagataagaaagaatagaag-aaaacaacaaaccagtatta 241  Q
    |||||||||||||||||||||| ||||  |||| ||||||||| |||| |||||    
T  33721703 attcaaagcaacaaagataagagagaaaggaagaaaaacaacacaccaatatta 33721650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 22963553 - 22963673
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||||| || ||||| || |||||| | |||||| ||  ||| |||||||| ||| ||| ||||||||||||||||||  |||||||||||||||||    
T  22963553 gtgtggagctaaggaagtggtaatcaattaataaagtgtctccaagcaacaacaacaaaaaacagacctagatctaagtgtagagcaacaccacaagcat 22963652  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| | |||||||    
T  22963653 aatcaaagcaatagagataag 22963673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 23824840 - 23824720
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||||| || ||||| || |||||| | |||||| ||  ||| |||||||| ||| ||| ||||||||||||||||||  |||||||||||||||||    
T  23824840 gtgtggagctaaggaagtggtaatcaattaataaagtgtctccaagcaacaacaacaaaaaacagacctagatctaagtgtagagcaacaccacaagcat 23824741  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| | |||||||    
T  23824740 aatcaaagcaatagagataag 23824720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 207
Target Start/End: Complemental strand, 1115358 - 1115229
Alignment:
Q  75 aataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagc 174  Q
    |||||||||||||  | ||||| |||||||||||| ||||||||| |||||| | |||| ||||||   |||||||||||| |||||||  ||||||||     
T  1115358 aataaaacttagatatatggagtaaaagaagtagtaatcaatgagcaaagtagcttcaagcaacaa---caacaaatagacatagatctctgtgtgaagt 1115262  T
Q  175 aacaccacaagcatattcaaagcaacaaagata 207  Q
    |||||||||  | |||| ||| |||||||||||    
T  1115261 aacaccacagtcttatttaaaccaacaaagata 1115229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 230
Target Start/End: Complemental strand, 30519265 - 30519123
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||||||||  || |||| ||||||||  ||| ||   |||| |||||||| ||||||| | |  ||||| ||||||||||||||||||| || |||    
T  30519265 gtgtggagcaaagaaaatagtaatcaatgatcaaaatagtctcaaacaacaacaacaacaaacatatttagatttaagtgtgaagcaacaccataaacat 30519166  T
Q  189 attcaaagcaacaaagataagaaagaatag-aagaaaacaaca 230  Q
    ||| |||||||||||||||||||| || || ||||||||||||    
T  30519165 atttaaagcaacaaagataagaaataagagaaagaaaacaaca 30519123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 9036157 - 9036272
Alignment:
Q  132 aatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaatag-aagaaaacaaca 230  Q
    ||||||||||| ||||||| | | |||||||||||||||||||||  ||||||  ||| ||||| ||||||||||||||||||| || ||||||||||||    
T  9036157 aatcaacaacaacaacaaacatatctagatctaagtgtgaagcaa-tccacaattataatcaaaacaacaaagataagaaagaagagaaagaaaacaaca 9036255  T
Q  231 aaccagtattatctacc 247  Q
     || | |||||| ||||    
T  9036256 cactaatattatttacc 9036272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 10077408 - 10077289
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  10077408 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcat 10077310  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| |||||||||    
T  10077309 aatcaaagcaataaagataag 10077289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 31979367 - 31979486
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| || |||| |||||||| ||| ||| ||||||| ||||||||||  ||||||| |||||||||    
T  31979367 gtgtggagcaaaggaagtggtaatcaatagataaagtgtcttcaagcaacaacaacaa-aaacagacctaaatctaagtgtagagcaacatcacaagcat 31979465  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| |||||||||    
T  31979466 aatcaaagcaataaagataag 31979486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 28301143 - 28301082
Alignment:
Q  154 acctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaa 215  Q
    ||||||||| |||||||||||||||| |||| ||||||||||| |||| |||||||||||||    
T  28301143 acctagatcgaagtgtgaagcaacactacaaacatattcaaagaaacagagataagaaagaa 28301082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 28510930 - 28510991
Alignment:
Q  154 acctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaa 215  Q
    ||||||||| |||||||||||||||| |||| ||||||||||| |||| |||||||||||||    
T  28510930 acctagatcgaagtgtgaagcaacactacaaacatattcaaagaaacagagataagaaagaa 28510991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 18232699 - 18232818
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||| |||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| | ||||||||||||||||  |||||||||||||||||    
T  18232699 gtgtgaagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa-aaacaaacctagatctaagtgtagagcaacaccacaagcat 18232797  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| |||||||||    
T  18232798 aatcaaagcaataaagataag 18232818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 21355892 - 21356008
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| || |||| |||||||| ||| ||| |||||||| ||| |||||  |||||||||||||||||    
T  21355892 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtcttcaagcaacaacaacaa-aaacagacctag-tct-agtgtagagcaacaccacaagcat 21355988  T
Q  189 attcaaagcaacaaagataag 209  Q
    || ||||| ||||||||||||    
T  21355989 atacaaag-aacaaagataag 21356008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 4629869 - 4629926
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    ||||||| ||||||||||  |||||||||||||||||| ||||||||| |||||||||    
T  4629869 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataag 4629926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 5017649 - 5017593
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||| |||||||||||    
T  5017649 agacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataag 5017593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 31936441 - 31936560
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||| ||||||| ||  ||| |||||||| |||  || ||||||  ||| ||||||  ||||||||||||||||    
T  31936441 gtgtggagcaaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa--aacagaccttaatcaaagtgtagagcaacaccacaagca 31936538  T
Q  188 tattcaaagcaacaaagataag 209  Q
    ||  |||||||| |||||||||    
T  31936539 taaacaaagcaataaagataag 31936560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 5757719 - 5757603
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| ||||||| |||| |||||  |||||||||||||||||    
T  5757719 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagaccta-atct-agtgtagagcaacaccacaagcat 5757623  T
Q  189 attcaaagcaacaaagataag 209  Q
    |  ||||| ||||||||||||    
T  5757622 aaacaaag-aacaaagataag 5757603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 30683792 - 30683868
Alignment:
Q  144 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaatagaa 220  Q
    |||||||||||||||||  |||||| ||||||| |||| ||| |||   ||| ||||||||||||||||||| ||||    
T  30683792 caacaaatagacctagagttaagtgcgaagcaataccataagtataacaaaaacaacaaagataagaaagaaaagaa 30683868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 99000 - 99051
Alignment:
Q  75 aataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagta 126  Q
    ||||||||||| |||||||||| ||| |||||||| ||||||||| ||||||    
T  99000 aataaaacttaaacgtgtggagtaaaggaagtagtaatcaatgagcaaagta 99051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 21247271 - 21247216
Alignment:
Q  160 atctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaa 215  Q
    ||||||||||||||||||| |||||| |||   ||||||| |||||||||||||||    
T  21247271 atctaagtgtgaagcaacaacacaagtataaagaaagcaagaaagataagaaagaa 21247216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 5572839 - 5572740
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| |||| || ||||||||||  |||||||||||||||||    
T  5572839 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacagcaa-aaacagacataaatctaagtgtagagcaacaccacaagcat 5572741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 22708919 - 22708997
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaa 215  Q
    |||||||| ||| ||| |||||||||||||| |||  ||||||||||||||  ||| |||||||| ||||||||| |||||    
T  22708919 caacaacaacaa-aaacagacctagatctaa-tgtagagcaacaccacaagtgtatccaaagcaataaagataagcaagaa 22708997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 209
Target Start/End: Complemental strand, 5990816 - 5990684
Alignment:
Q  75 aataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagc 174  Q
    ||||||||  ||| ||| |||||||| |||||||| |||||||  ||||||| |||||| ||||||||   ||||||||||||| ||||||||||  | |    
T  5990816 aataaaacaaagatgtgcggagcaaaggaagtagtaatcaatggataaagtagcatcaagcaacaaca---acaaatagacctaaatctaagtgtagaac 5990720  T
Q  175 aacaccacaagcatattc-aaagcaacaaagataag 209  Q
    || ||||||||||||||| |||||||||||||||||    
T  5990719 aaaaccacaagcatattcaaaagcaacaaagataag 5990684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 5702726 - 5702607
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || |||||||| |||||| ||  | | |||||||| ||| ||| ||||||||||||||||||  |||| ||||||||||||    
T  5702726 gtgtggagcaaatgaagtggtaatcaatgaataaagtgtctcctagcaacaacaacaa-aaacagacctagatctaagtgtagagcatcaccacaagcat 5702628  T
Q  189 attcaaagcaacaaagataag 209  Q
    | | ||||||| | |||||||    
T  5702627 aattaaagcaatagagataag 5702607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 28307428 - 28307539
Alignment:
Q  102 gaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaaca 201  Q
    |||||||| |||||||||| ||||| | ||||  ||| ||| ||||||||| ||||| ||||||||||  | || |||||||||||||  |||||||| |    
T  28307428 gaagtagtaatcaatgagtcaagtagcctcaagtaacgacaacaacaaataaacctaaatctaagtgtataacagcaccacaagcataaacaaagcaata 28307527  T
Q  202 aagataagaaag 213  Q
    || |||||||||    
T  28307528 aatataagaaag 28307539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 26403411 - 26403354
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    ||||||| ||||||||||  |||||||||||||||||| ||||||||| |||||||||    
T  26403411 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataag 26403354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 9766063 - 9765944
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| |||||  | ||||||   |||||| ||  ||| |||||||| ||| ||| | ||||| ||||||||||  |||||||||||||||||    
T  9766063 gtgtggagcaaaggaagtgataatcaatagataaagtgtctccaagcaacaacaacaa-aaacaaacctaaatctaagtgtagagcaacaccacaagcat 9765965  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| |||||||||    
T  9765964 aatcaaagcaataaagataag 9765944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 11771857 - 11771928
Alignment:
Q  144 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaa 215  Q
    ||||||| | |||||||||||||| ||||||||||||| |||||||   ||| |||||||||||| ||||||    
T  11771857 caacaaacatacctagatctaagtatgaagcaacaccaaaagcataacaaaaacaacaaagataataaagaa 11771928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 34477407 - 34477336
Alignment:
Q  144 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaa 215  Q
    ||||||| ||| |||||| |||| ||||| |||||| |||| |||| ||||||||| |||||||||||||||    
T  34477407 caacaaagagatctagatttaagggtgaaacaacactacaaacatagtcaaagcaataaagataagaaagaa 34477336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 28387898 - 28387955
Alignment:
Q  152 agacctagatctaagtgtgaagcaaca-ccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||||||||||||||||||||| | | ||||||||| | ||||||||||||||||    
T  28387898 agacctagatctaagtgtgaagcaaaatcaacaagcataatgaaagcaacaaagataa 28387955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 7493325 - 7493210
Alignment:
Q  75 aataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatca------acaacatcaacaaatagacctagatctaagtg 168  Q
    |||||||||  || |||||||||||| |||||||| ||||||| ||||||||   |||| ||      |||||| ||||||||||| ||| |||||||||    
T  7493325 aataaaactatgatgtgtggagcaaaggaagtagtaatcaatgtgtaaagtagtctcaagcagcagcaacaacaacaacaaatagatctaaatctaagtg 7493226  T
Q  169 tgaagcaacaccacaa 184  Q
    |  |||||||||||||    
T  7493225 tagagcaacaccacaa 7493210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 8863824 - 8863752
Alignment:
Q  139 aacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaa 211  Q
    |||| ||||||| | ||||| | ||| ||||||| |||||||||||  ||||||||||||||||| |||||||    
T  8863824 aacaacaacaaagaaacctacacctatgtgtgaaacaacaccacaaatatattcaaagcaacaaatataagaa 8863752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 4696793 - 4696720
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    |||||||| ||| ||| |||| || ||||||||||  ||||||||||||| |||| ||||||||| |||||||||    
T  4696793 caacaacaacaa-aaacagacataaatctaagtgtagagcaacaccacaaacataatcaaagcaataaagataag 4696720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 19752637 - 19752518
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||   |||||| ||  ||| |||||||| |||  || ||||||| ||||||||||   |||||||||||||||    
T  19752637 gtgtggagcaaaaggaagtggtaatcaatatataaagtgtctccaagcaacaacaacaa--aacagacctaaatctaagtgtagtgcaacaccacaagca 19752540  T
Q  188 tattcaaagcaacaaagataag 209  Q
    || ||||||||| | |||||||    
T  19752539 taatcaaagcaatagagataag 19752518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 23799774 - 23799701
Alignment:
Q  136 aacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    ||||||| ||| ||||||||||||||||||||||  || |  ||||||| |||| ||||||||| | |||||||    
T  23799774 aacaacaacaaaaaatagacctagatctaagtgtagagaagtaccacaaacataatcaaagcaatagagataag 23799701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 4455882 - 4455999
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| |||||| || || |||||  |||||||| ||||||||    
T  4455882 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacagcaa-aaacagacctgga-cttagtgtagagcaacacaacaagcat 4455979  T
Q  189 attcaaagcaacaaagataag 209  Q
    |  |||||| |||||||||||    
T  4455980 aaacaaagc-acaaagataag 4455999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 31513469 - 31513417
Alignment:
Q  188 tattcaaagcaacaaagataagaaagaatagaagaaaacaacaaaccagtatt 240  Q
    ||||||||||||||||||||| | ||||  ||||||||||||| |||| ||||    
T  31513469 tattcaaagcaacaaagataaaagagaaaggaagaaaacaacacaccaatatt 31513417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 249
Target Start/End: Complemental strand, 16178 - 16071
Alignment:
Q  144 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagat-aagaaagaatagaag-aaaacaacaaaccagtatta 241  Q
    ||||||||  ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||| ||||  |||| ||||||||| |||| |||||    
T  16178 caacaaatttacctagatctaagtgtgaaacaacaccacaaacatattcaaagcaacaaagataaagagagaaaggaagaaaaacaacacaccaatatta 16079  T
Q  242 tctaccca 249  Q
    | ||||||    
T  16078 tttaccca 16071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 16236 - 16190
Alignment:
Q  75 aataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagta 121  Q
    ||||||||||||| |||| ||||||| |||||||| |||||||||||    
T  16236 aataaaacttagatgtgtcgagcaaaggaagtagtaatcaatgagta 16190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 10628 - 10702
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 209  Q
    |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||| ||||||||| |||||||||    
T  10628 caacaacaacaaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataag 10702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 2346 - 2465
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| |||||  | ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||||||||||||||  | |||||||||||||||    
T  2346 gtgtggagcaaaggaagtgttgatcaatagataaagtgtctccaagcaacaacaacaa-aaacagacctagatctaagtgtagaacaacaccacaagcat 2444  T
Q  189 attcaaagcaacaaagataag 209  Q
    | ||||||||| |||||||||    
T  2445 aatcaaagcaataaagataag 2465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 5535 - 5656
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaata--gacctagatctaagtgtgaagcaacaccacaagc 186  Q
    |||||||| ||| ||||| || |||||| ||| |||| ||  ||| |||||||| ||||||| |  |||||||||||||||||  || ||||||||||||    
T  5535 gtgtggagtaaaggaagtggtaatcaat-agttaagtgtctccaaacaacaacaacaacaaaaacagacctagatctaagtgtagagaaacaccacaagc 5633  T
Q  187 atattcaaagcaacaaagataag 209  Q
    ||| ||||||||| |||||||||    
T  5634 ataatcaaagcaataaagataag 5656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 85539 - 85656
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||| ||||||| ||||| || ||||||| ||||||| ||  ||| ||||||||  ||  || ||||||||||||||||||  ||||||| |||||||||    
T  85539 gtgtagagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaataa--aacagacctagatctaagtgtagagcaacatcacaagcat 85636  T
Q  189 attcaaagcaacaaagataag 209  Q
    |  |||||| |||||||||||    
T  85637 aaccaaagc-acaaagataag 85656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 29733 - 29673
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaa 149  Q
    ||||| |||||| ||||| || |||||||||||||||||| |||| |||||||| ||||||    
T  29733 gtgtgaagcaaaggaagtggtaatcaatgagtaaagtatcctcaaccaacaacaacaacaa 29673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 29649 - 29613
Alignment:
Q  166 gtgtgaagcaacaccacaagcatattcaaagcaacaa 202  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  29649 gtgtaaagcaacaccacaagcataatcaaagcaacaa 29613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 44202 - 44086
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| ||||||| |||| |||||  |||||||||||||||||    
T  44202 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagaccta-atct-agtgtagagcaacaccacaagcat 44106  T
Q  189 attcaaagcaacaaagataag 209  Q
    |  ||||| ||||||||||||    
T  44105 aaacaaag-aacaaagataag 44086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 43111 - 43171
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaa 149  Q
    ||||| |||||| ||||| || |||||||||||||||||| |||| |||||||| ||||||    
T  43111 gtgtgaagcaaaggaagtggtaatcaatgagtaaagtatcctcaaccaacaacaacaacaa 43171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 43191 - 43231
Alignment:
Q  162 ctaagtgtgaagcaacaccacaagcatattcaaagcaacaa 202  Q
    ||| |||| ||||||||||||||||||| ||||||||||||    
T  43191 ctatgtgtaaagcaacaccacaagcataatcaaagcaacaa 43231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 14593 - 14657
Alignment:
Q  144 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||| | ||||| |||||||| ||||| |||||| ||||||| ||||||| |||||||||||    
T  14593 caacaaacatacctatatctaagtatgaagaaacacctcaagcatgttcaaagaaacaaagataa 14657  T

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Target: scaffold0176 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 17181 - 17239
Alignment:
Q  154 acctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaa 212  Q
    ||||| |||||||| |  |||||||||||||||||| | ||||||| ||||||||||||    
T  17181 acctaaatctaagtatagagcaacaccacaagcataattaaagcaataaagataagaaa 17239  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 102664 - 102603
Alignment:
Q  154 acctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaagaa 215  Q
    ||||||||| |||||||| |||| | | |||| |||||||||| ||||||||||| ||||||    
T  102664 acctagatccaagtgtgacgcaaaatcgcaagtatattcaaagaaacaaagataaaaaagaa 102603  T

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Target: scaffold0098 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 45109 - 45225
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| ||||| || ||| |||||  ||||||||||||| |||    
T  45109 gtgtggagcaaatgaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagaccaag-tct-agtgtagagcaacaccacaaacat 45205  T
Q  189 attcaaagcaacaaagataag 209  Q
    || ||||| ||||||||||||    
T  45206 atacaaag-aacaaagataag 45225  T

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