View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_high_48 (Length: 251)
Name: NF1380_high_48
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_high_48 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 41314551 - 41314754
Alignment:
| Q |
30 |
cttacaaccgatcgtgaatggctaactctcaccattcaatatatccctactaagtataaaattatttgttcacatttgagttcctaagattcacaaatct |
129 |
Q |
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| T |
41314551 |
cttacaaccgatcgtgaatggctaactctcaccattcaatatatc--------------aattatttgttcacatttgagttcctaagatttc----tct |
41314632 |
T |
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| Q |
130 |
taggtacttgacaaaacctcattatagttttggcccatgtataggatccaaaactaaaatttattgcatttgcatatatgaaaaggataattagaagcat |
229 |
Q |
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| T |
41314633 |
taggtacttgacaaaacctcattatagttttgtcccatgtataggatccaaaactaaaatttattgcatttgcatatatgaaaaggataattagaagcat |
41314732 |
T |
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| Q |
230 |
ttaggtaagcaatttaatgaaa |
251 |
Q |
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| T |
41314733 |
ttaggtaagcaatttaatgaaa |
41314754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 41314771 - 41314811
Alignment:
| Q |
211 |
aaaggataattagaagcatttaggtaagcaatttaatgaaa |
251 |
Q |
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| T |
41314771 |
aaaggatatttagaagcatttagctaagcaatttaatgaaa |
41314811 |
T |
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