View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_high_6 (Length: 527)
Name: NF1380_high_6
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 2660334 - 2660849
Alignment:
| Q |
1 |
ttgttgatccatttgtctcttataaaaaatgacattttgtcgacataacatcaatgctatatgtc-gagaggttttcatgcaaattttcataaattatac |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
2660334 |
ttgttgatccatttgtctcttataaaaaatgacattttgtcgacataacatcaatgctatatgtctgagaggttttcatgcaaattttcataaataatac |
2660433 |
T |
|
| Q |
100 |
aggttttcactccaattgctaactag----catgcgaagcaccatcaccatttcaaatcttggtacccaataaatacacttattgaaatgtttatgttat |
195 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2660434 |
aggttttcactccaattgctaactagctagcatgcgaagcaccatcaccatttcaaatcttggtacccaaaaaatacacttattgaaatgtttatgttat |
2660533 |
T |
|
| Q |
196 |
ggtatgcaacttcataagcattgaaacattcaatagattcagagtgtaaccctactcatgtagtacatacttaactaatgcaaccaaccaaacacacata |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| |
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| T |
2660534 |
ggtatgcaacttcataagcattgaaacattcaatagattcagagtgtaaccctactcatgcagtacatacttaaccaatgaaaccaaccaaacacacata |
2660633 |
T |
|
| Q |
296 |
gtaccacctactctgtttccaaaaaataaacatacaacctactccccctgcataaatattcggtttcatttgtagatttgtatcccacaagaactatacc |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2660634 |
gtaccacctactctgtttccaaaaaataaacatacaacctactccccctgcataaatattcggtttcatttgtagatttgtatcccacaagaattatacc |
2660733 |
T |
|
| Q |
396 |
aaaacaccactccaatttcacttcactagggtagaatttcttatcttcttccttttctcacaaattcatcttttagatctaaattctttttcagaattat |
495 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2660734 |
aaaacaccactccaatttcacttcactacggtagagtttcttatcttct---ttttctcacaaattcatcttttagatctaaattctttttcaaaattat |
2660830 |
T |
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| Q |
496 |
ct-acccacctggtcggtc |
513 |
Q |
| |
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| T |
2660831 |
ttaacccacctggtcggtc |
2660849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 43661034 - 43660953
Alignment:
| Q |
142 |
accatttcaaatcttggtaccca--ataaatacacttattgaaatgtttatgttatggtatgcaacttcataagcattgaaa |
221 |
Q |
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|||||||||||||| ||| |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43661034 |
accatttcaaatctaggtgcccataataaccacacttattgaaatgtttatgttatggtatgcagcttcataagcattgaaa |
43660953 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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