View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_10 (Length: 463)
Name: NF1380_low_10
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 73 - 400
Target Start/End: Complemental strand, 49667484 - 49667157
Alignment:
| Q |
73 |
tgataacaaattatccttaaaaaatcattttgttcattccaatcttttataactttgtttacatctaaaaatgagagctgttagccgaatttgacaagtt |
172 |
Q |
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| T |
49667484 |
tgataacaaattatccttaaaaaatcattttgttcattccaatcttttataactttgtttacatctaaaaatgagagctgttagctgaatttgacaagtt |
49667385 |
T |
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| Q |
173 |
ggcgattccaacaattagacgagaagcctctcaattgagtgaagtttaggcaatactgaaacatccagcgagggagatgattattttgtcaaggcactaa |
272 |
Q |
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| T |
49667384 |
ggcgattccaacaattagacgagaagcctctcaattgagtgaagtttaggcaatactgaaacatccagcgagggagatgattattttgtcaaggcactaa |
49667285 |
T |
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| Q |
273 |
ccaagaacacggtggaggctcaaaagtgagtcaaagacactagataatgacgcatacccacaatttggtgctctcaacgacaatactacactaaagaata |
372 |
Q |
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| T |
49667284 |
ccaagaacacggtggaggctcaaaagtgagtcaaagacactagataatgacgcatacccacaatttggtgctctcaacgacaatactacactaaagaata |
49667185 |
T |
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| Q |
373 |
agggattggacacgacaaacaatggatc |
400 |
Q |
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| T |
49667184 |
agggattgaacacgacaaacaatggatc |
49667157 |
T |
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