View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_11 (Length: 457)
Name: NF1380_low_11
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 422
Target Start/End: Original strand, 27141962 - 27142372
Alignment:
| Q |
12 |
gaatatgaatgacgtgtttcatagattattttccaaatctaaaactataaaaataagttgattgctgagttatggtctctatctaaaacaaaa-caaatg |
110 |
Q |
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| T |
27141962 |
gaatatgaaggacgtgtttcatagattattttccaaatctaaaacta--aaaataagttgattgctgagttatggtctctatctaaaacaaaaacaaatg |
27142059 |
T |
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| Q |
111 |
gtcatcaatcaaataaattatnnnnnnnnc---cctccttaattatcttgggaagaaaaaacaaagtattatgttcattgatagtctacaaacttaatgt |
207 |
Q |
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| T |
27142060 |
gtcatcaatcaaataaattataaaaaaaaaaaacctccttaattatcttgggaagaaaaaa--aagtattatgttcattgatagtccacaaaattaatgt |
27142157 |
T |
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| Q |
208 |
tgtactttattttgttaggtttatgtcttgggctgctatgtctatgaagatagattatccatatctagttaggtgtgtctttatccgtattacttaaaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27142158 |
tgtactttattttgttaggtttatgtcttgggctgctatgtctatgaagagagattatccatatctagttaggtgtgtctttatctgtattacttaaaat |
27142257 |
T |
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| Q |
308 |
attgctcttgcgtgttacttaaaatgatttaatagacagacatacaaagttagtgaatgatacagtgtaattgggtcattgtctaattacttgttatcaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27142258 |
attgctcttgcgtgttacttaaaatgatttaatagacagacatacaaagttagtgaatgatacagtgtaattgggtcattgtctaattacttgttatcaa |
27142357 |
T |
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| Q |
408 |
tgcttacatagagac |
422 |
Q |
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| T |
27142358 |
tgcttacatagagac |
27142372 |
T |
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