View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_12 (Length: 454)
Name: NF1380_low_12
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 34779281 - 34779519
Alignment:
| Q |
30 |
tatgcagtatagactccaaaagaaattagatattataaacatgcatggtggaataggaaatatttaccaaatgtgttgtaagtgcatgtgattaagttag |
129 |
Q |
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| T |
34779281 |
tatgcagtacagactccaaaagaaattagatattataaacatgcatggtggaataggaaatatttaccaaatgtgttgtaagtgcatgtgattaagttaa |
34779380 |
T |
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| Q |
130 |
ccatttatatcgcatcagagaacacagccctttgaaattttgctgacagcttttggtaggactgaaattctgagggctgaacctgtttgattgccatctt |
229 |
Q |
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| T |
34779381 |
ccatttatatcgcatcagagaacacggccctttgaaattttgctgacagcttttggtaggactgaaattctgagggctgaacctgtttgattgccatctt |
34779480 |
T |
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| Q |
230 |
aaagtgcttcattgttacaacggaagcatcaaagctttc |
268 |
Q |
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| T |
34779481 |
aaagtgcttcattgttacaacggaagcatcaaagctttc |
34779519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 290 - 454
Target Start/End: Original strand, 4108064 - 4108227
Alignment:
| Q |
290 |
tatgtacatttatttcatcaatgttcctacatcaattatcatgagtaaaaaattctaccttacataacatcgttgctactataccaacacctcatacagt |
389 |
Q |
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| T |
4108064 |
tatgtacatttatttcatcaatgttcctacatgaattatcatgagtaaaaaattctaccttacataacatcgttgctactataccaacacctcatacagt |
4108163 |
T |
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| Q |
390 |
atttcataaagtatcttatgaaataaaaagcccttataaacgcttatatcgtatctatacatttt |
454 |
Q |
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| T |
4108164 |
atttcataaagtatcttatgaaat-aaaagcccttataaacccttatatcgtatctatacatttt |
4108227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 147 - 268
Target Start/End: Complemental strand, 34682979 - 34682858
Alignment:
| Q |
147 |
gagaacacagccctttgaaattttgctgacagcttttggtaggactgaaattctgagggctgaacctgtttgattgccatcttaaagtgcttcattgtta |
246 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||||| |||| |||||| ||||||||||||||||||||| |
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| T |
34682979 |
gagaacacagccctttgaaattttgctgacaacttttgataggactgagtttctgtgggctgaacttgttcaattgccgtcttaaagtgcttcattgtta |
34682880 |
T |
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| Q |
247 |
caacggaagcatcaaagctttc |
268 |
Q |
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||||||||||||||||| |||| |
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| T |
34682879 |
caacggaagcatcaaagttttc |
34682858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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