View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1380_low_15 (Length: 441)

Name: NF1380_low_15
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1380_low_15
NF1380_low_15
[»] chr2 (4 HSPs)
chr2 (30-187)||(40925518-40925675)
chr2 (186-350)||(40925872-40926032)
chr2 (119-161)||(40926018-40926060)
chr2 (294-340)||(40925653-40925699)
[»] chr8 (1 HSPs)
chr8 (29-145)||(44313626-44313742)
[»] chr6 (1 HSPs)
chr6 (29-145)||(34099150-34099266)
[»] chr1 (4 HSPs)
chr1 (32-149)||(6717069-6717189)
chr1 (206-272)||(6716248-6716313)
chr1 (294-338)||(6717199-6717243)
chr1 (38-74)||(6716452-6716488)
[»] scaffold0086 (1 HSPs)
scaffold0086 (30-145)||(40790-40905)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 9e-77; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 40925518 - 40925675
Alignment:
Q  30 tatttcagaaacattgaatcccatgtttcttttgcttccttgtaccggaaatacacattgaaaaactcgttagataagataatcataacagtgtgacgac 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  40925518 tatttcagaaacattgaatcccatgtttcttttgcttccttgtactggaaatacacattgaacaactcgttagataagatactcataacagtgtgacgac 40925617  T
Q  130 ataccttatttgcatgagtccatgtctcaactagccaacttgtttcggtgttgatgaa 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40925618 ataccttatttgcatgagtccatgtctcaactagccaacttgtttcggtgttgatgaa 40925675  T

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Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 186 - 350
Target Start/End: Original strand, 40925872 - 40926032
Alignment:
Q  186 aattccgtggcctataaaaaattgaagtctttgctggtcagaatcttttcaaggtggcaggagcagatcaattcaacacttgacttacgtggtgtacgtt 285  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    
T  40925872 aattccgtggcgtataaaaaattgaagtctttgctggtcagaatcttttcaaggtggcaggagcagatcaattcaacacttgacttacgtggt----gtt 40925967  T
Q  286 gcttttaccctcactacctcaaagccaccgtcttcatcaacaccgaaacaagttgagacatggac 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40925968 gcttttaccctcactacctcaaagccaccgtcttcatcaacaccgaaacaagttgagacatggac 40926032  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 40926060 - 40926018
Alignment:
Q  119 agtgtgacgacataccttatttgcatgagtccatgtctcaact 161  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  40926060 agtgtgacgacataccttatttgtatgagtccatgtctcaact 40926018  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 40925699 - 40925653
Alignment:
Q  294 cctcactacctcaaagccaccgtcttcatcaacaccgaaacaagttg 340  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||||    
T  40925699 cctcactacctcaaacccactttcttcatcaacaccgaaacaagttg 40925653  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 44313742 - 44313626
Alignment:
Q  29 atatttcagaaacattgaatcccatgtttcttttgcttccttgtaccggaaatacacattgaaaaactcgttagataagataatcataacagtgtgacga 128  Q
    ||||||||||| ||| ||||||||| |||| || ||||||||||||    | || |||| ||| ||||| ||||| ||| || |||||| ||||||||||    
T  44313742 atatttcagaaccatggaatcccatatttccttcgcttccttgtacgaacagtagacatcgaataactcattagacaaggtagtcataatagtgtgacga 44313643  T
Q  129 cataccttatttgcatg 145  Q
    |||||||||||||||||    
T  44313642 cataccttatttgcatg 44313626  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 34099150 - 34099266
Alignment:
Q  29 atatttcagaaacattgaatcccatgtttcttttgcttccttgtaccggaaatacacattgaaaaactcgttagataagataatcataacagtgtgacga 128  Q
    ||||||||||| ||| ||||||||| |||| || ||||||||||||    | || |||| ||| ||||| ||||| ||| || |||||| ||||||||||    
T  34099150 atatttcagaaccatggaatcccatatttccttcgcttccttgtacgaacagtagacatcgaataactcattagacaaggtagtcataatagtgtgacga 34099249  T
Q  129 cataccttatttgcatg 145  Q
    |||||||||||||||||    
T  34099250 cataccttatttgcatg 34099266  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 6717069 - 6717189
Alignment:
Q  32 tttcagaaacattgaatcccatgtttcttttgcttccttgtaccggaaatacacattgaaaaactcgttag--ataagataatcataacagtgtgacgac 129  Q
    |||||||| ||||||||||||| || |||| ||||||||||||  ||| ||||||| ||| ||||| ||||  ||||| || |||||| ||||||| | |    
T  6717069 tttcagaaccattgaatcccatattcctttcgcttccttgtacgagaagtacacatggaacaactcattagatataaggtactcataatagtgtgatggc 6717168  T
Q  130 atacctt-atttgcatgagtc 149  Q
    ||||||| |||||||||||||    
T  6717169 ataccttaatttgcatgagtc 6717189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 6716248 - 6716313
Alignment:
Q  206 attgaagtctttgctggtcagaatcttttcaaggtggcaggagcagatcaattcaacacttgactta 272  Q
    |||||||||||||||||||||||| |||  ||| |||||||||| ||| ||||||||||||||||||    
T  6716248 attgaagtctttgctggtcagaat-tttcgaagatggcaggagcggattaattcaacacttgactta 6716313  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 6717243 - 6717199
Alignment:
Q  294 cctcactacctcaaagccaccgtcttcatcaacaccgaaacaagt 338  Q
    ||||||||||||||||||||| |||| ||||||| ||||||||||    
T  6717243 cctcactacctcaaagccaccttcttaatcaacatcgaaacaagt 6717199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 6716488 - 6716452
Alignment:
Q  38 aaacattgaatcccatgtttcttttgcttccttgtac 74  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  6716488 aaacattgaatcccatatttctttcgcttccttgtac 6716452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 40790 - 40905
Alignment:
Q  30 tatttcagaaacattgaatcccatgtttcttttgcttccttgtaccggaaatacacattgaaaaactcgttagataagataatcataacagtgtgacgac 129  Q
    |||||||||| ||| ||||||||| |||| || ||||||||||||    | || |||| ||| ||||| ||||| ||| || |||||| |||||| ||||    
T  40790 tatttcagaaccatggaatcccatatttccttcgcttccttgtacgaacagtagacatcgaataactcattagacaaggtagtcataatagtgtggcgac 40889  T
Q  130 ataccttatttgcatg 145  Q
    ||||||||||||||||    
T  40890 ataccttatttgcatg 40905  T

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