View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_16 (Length: 434)
Name: NF1380_low_16
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 29 - 424
Target Start/End: Original strand, 7322396 - 7322792
Alignment:
| Q |
29 |
atattctacaaaaactctatctacaaaataaactagcatcgccatcaatcttccgtgagattctctgcaagtgacagcaaatatattgctaaatgactga |
128 |
Q |
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| T |
7322396 |
atattctacaaaagctctatctacaaaataaactagcatcgccatcaatcttccgtgagattctctgcaagtgacagcaaatatattgctaaatgactga |
7322495 |
T |
|
| Q |
129 |
gaaatgcgcatcaccaaagttccctgagcaatttcatctg-gcagaacgttcgaaagaatcatagaaaaagtaaacatgctttcaaaattatcttacttg |
227 |
Q |
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| T |
7322496 |
gaaatgtgcatcaccaaagttccctgagcaatgtcatctgtgcagaacgttcgaaagaatcatagaaaaagtaaacatgctttcaaaattatcttacttg |
7322595 |
T |
|
| Q |
228 |
gaagatagttgatcccgcgacagaaagtttaaatgactgaaatcaatataaaattcactgcaatgcctcacataaactaaaccaattctaggcagtaacc |
327 |
Q |
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| T |
7322596 |
gaagatagttgatcccgcgatagaaagtttaaatgactgaaatcaatataaaattcactgcaatgcctcacataaactaaaccaattctaggcagtaacc |
7322695 |
T |
|
| Q |
328 |
tgtaaaacactttcctccctagattctactgagaattctaggcagtcaattctactgaattcattgaaaggtagtatcccttacacattggtctctg |
424 |
Q |
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| T |
7322696 |
tgtaaaacactttcctccctagattctactgagaattctaggcagtcaattctactgaattcattgaaaggtagtatcccttacacattggtctctg |
7322792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 276 - 356
Target Start/End: Complemental strand, 7231271 - 7231190
Alignment:
| Q |
276 |
taaaattcactgcaatgcctc-acataaactaaaccaattctaggcagtaacctgtaaaacactttcctccctagattctac |
356 |
Q |
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| T |
7231271 |
taaaattcactgttatacctcgacataaactaaaccaattctaggcagtaacctgtaaaacactttcctccctagattctac |
7231190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 424
Target Start/End: Original strand, 29264973 - 29265011
Alignment:
| Q |
386 |
attcattgaaaggtagtatcccttacacattggtctctg |
424 |
Q |
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| T |
29264973 |
attcattgaaaggtagcatcccttacatattggtctctg |
29265011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 25615463 - 25615519
Alignment:
| Q |
302 |
aactaaaccaattctaggcagtaacctgtaaaacactttcctccctagattctactgag |
360 |
Q |
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|||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
25615463 |
aactaaacaaattttaggcagtaacctc--aaacacttttctccctagattctactgag |
25615519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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