View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_17 (Length: 419)
Name: NF1380_low_17
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 305
Target Start/End: Complemental strand, 7000414 - 7000118
Alignment:
| Q |
30 |
gggatttttgtcatagtcactattttatactatactagatcaaatgtgtaaaagaagtgttataaaatgaattttcttaatcagtcaatacaatatactt |
129 |
Q |
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| T |
7000414 |
gggatttttgtcatagtcactattttatactatactagatcaaatgtgtaaaagaagtgttataaaatgaattttcttaattagtcaatacaatatactt |
7000315 |
T |
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| Q |
130 |
atctttaacagaattataacct-ctctcaccttaattttttattttgattcatagactaaatgacaaagacattataaacttatata------------- |
215 |
Q |
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| T |
7000314 |
atctttaacagaattataaactcctctcatcttaattttttgttttgattcatagagtaaatgacaaagacattataaacttatatacaaatgaatatgt |
7000215 |
T |
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| Q |
216 |
-------caaacaccgatcatcataacgtttgacttaacaattttgttatttttatacttgaattaggatttgtggataaattagataatctttttt |
305 |
Q |
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| T |
7000214 |
cagaattcaaaccccgatcatcataacgtttgacttaacaattttgttatttttatacttgaattaggatttgtggataaattagataatctttttt |
7000118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 287 - 419
Target Start/End: Complemental strand, 7000101 - 6999969
Alignment:
| Q |
287 |
aaattagataatcttttttctaattagtggatgttaaactaatgagatattataacagaatagggcccatatgtttcaaaattgcactaatgactgagtc |
386 |
Q |
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| T |
7000101 |
aaattagataatcttttttctaattagtggatattaaactaatgagatattataacagaatagggcccatatgtttcaaaattgcactaatgactgagtc |
7000002 |
T |
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| Q |
387 |
aatagcattgcatttcgactcagtcaactacat |
419 |
Q |
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| T |
7000001 |
aatagcattgcatttcgactcagtcaactacat |
6999969 |
T |
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