View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_2 (Length: 783)
Name: NF1380_low_2
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_2 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 161 - 767
Target Start/End: Original strand, 4108064 - 4108646
Alignment:
| Q |
161 |
tatgtacatttatttcatcaatgttcctacatcaattatcatgagtaaaaaattctaccttacataacatcgttgctactataccaacacctcatacagt |
260 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4108064 |
tatgtacatttatttcatcaatgttcctacatgaattatcatgagtaaaaaattctaccttacataacatcgttgctactataccaacacctcatacagt |
4108163 |
T |
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| Q |
261 |
atttcataaagtatcttatgaaataaaaagcccttataaacgcttatatcgtatctatacattttgtgggcatatagtattcataaacacgatatagtat |
360 |
Q |
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| T |
4108164 |
atttcataaagtatcttatgaaataaaa-gcccttataaacccttatatcgtatctatacattttgtgggcatata--------------------gtag |
4108242 |
T |
|
| Q |
361 |
tcataaacaccttctaaatatctacaattcctttcatagatatatagattccactgaagaaaccaacaaatcctgaaagagagaacatttctactttaac |
460 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4108243 |
tcataaacaccttctaaa-atctacaattcctttcattgatatatagattccactgaagaaaccaacaaatcctgaaagagagaacatttctactttagc |
4108341 |
T |
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| Q |
461 |
ttatacatcaatgttataggatcacatcacttaacataatcaataaatacattaacagtatatacctg--aacaacattgtcagaggatttgagaacatc |
558 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
4108342 |
ttatacatcaatgttataggatcacatcacttaacacaatcaata----cattaacagtatatacctgttaacaacagtgtcagaggatttgagaacatc |
4108437 |
T |
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| Q |
559 |
accatcagcaacatcatcacccaaactaacatcctcttcatggacattcttctacaataaaagccaaaagaaatcagcgttcatccttagcttgtaaaat |
658 |
Q |
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| T |
4108438 |
accatcagcaacatcatcacccaaactaacatcctcttcatggacattcttctacaataaaagtcaaaagaaatcagcgttgatccttagcttgtaaaat |
4108537 |
T |
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| Q |
659 |
atttaaagcaaaaagatatctttttaatcgacattaatcaaatcatagatgttgcctacaataccatcaaatatttatatttggtgcaaaatttgtctac |
758 |
Q |
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| T |
4108538 |
acttaaagcaaacagatatctttttaatcgacattaatcaaatcatagatgttgcctataataccatcaaatatttatatttggtgcgaaacatgtctac |
4108637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 573 - 767
Target Start/End: Complemental strand, 8994904 - 8994709
Alignment:
| Q |
573 |
catcacccaaactaacatcctcttcatggacattcttctacaataaaagccaaaagaaatcagcgttcatcct-tagcttgtaaaatatttaaagcaaaa |
671 |
Q |
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| T |
8994904 |
catcaaccaaactaacatcctcttcatggacattcttctacaataaaagtcagtagaaatcagcgttaatcctattacttgaattatacgtaaatcaaaa |
8994805 |
T |
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| Q |
672 |
agat--atctttttaatcgacattaatcaaatcatagatgttgcctacaataccatcaaatatttatatttggtgcaaaatttgtctaccaacacagg |
767 |
Q |
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| || || |||| |||| ||||||| |||| ||||||| ||||| ||||||||||||| |||||||||||| ||| || |||||||||||||| |
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| T |
8994804 |
a-atggattttttaaatcaacattaa-aaaattatagatgcagcctataataccatcaaatctttatatttggtctgaaacttttctaccaacacagg |
8994709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 352 - 427
Target Start/End: Complemental strand, 8996773 - 8996697
Alignment:
| Q |
352 |
atatagtattcataaacacctt-ctaaatatctacaattcctttcatagatatatagattccactgaagaaaccaac |
427 |
Q |
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| T |
8996773 |
atataatattcacaaacacctttctaaatatctacaattcctttcatagatatgtagattccacagcagaaaccaac |
8996697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 427 - 505
Target Start/End: Complemental strand, 8996214 - 8996136
Alignment:
| Q |
427 |
caaatcctgaaagagagaacatttctactttaacttatacatcaatgttataggatcacatcacttaacataatcaata |
505 |
Q |
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| T |
8996214 |
caaatcctgaaagagagaacatttctaccttagcttataagtcaatgttatagcataacgtcacttaacacaatcaata |
8996136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 34779478 - 34779519
Alignment:
| Q |
98 |
cttaaagtgcttcattgttacaacggaagcatcaaagctttc |
139 |
Q |
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| T |
34779478 |
cttaaagtgcttcattgttacaacggaagcatcaaagctttc |
34779519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 34682899 - 34682858
Alignment:
| Q |
98 |
cttaaagtgcttcattgttacaacggaagcatcaaagctttc |
139 |
Q |
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| T |
34682899 |
cttaaagtgcttcattgttacaacggaagcatcaaagttttc |
34682858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 6e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 518 - 644
Target Start/End: Original strand, 21413416 - 21413542
Alignment:
| Q |
518 |
gtatatacctgaacaacattgtcagaggatttgagaacatcaccatcagcaacatcatcacccaaactaacatcctcttcatggacattcttctacaata |
617 |
Q |
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| T |
21413416 |
gtatatacctgaacaatagtgtcggatgatttgagagcaccaccatcaacgacaccatcaaccaaattaacatcctcttcatggacattcttctacaata |
21413515 |
T |
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| Q |
618 |
aaagccaaaagaaatcagcgttcatcc |
644 |
Q |
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| T |
21413516 |
aaagttagtagaaatcagcgttaatcc |
21413542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 352 - 426
Target Start/End: Original strand, 21411988 - 21412063
Alignment:
| Q |
352 |
atatagtattcataaacaccttctaaatatctacaat-tcctttcatagatatatagattccactgaagaaaccaa |
426 |
Q |
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| T |
21411988 |
atatagtattcacaaacaccttctaaatatctacaatcttaatacatagatatgtagattccacagcagaaaccaa |
21412063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 21412553 - 21412601
Alignment:
| Q |
427 |
caaatcctgaaagagagaacatttctactttaacttatacatcaatgtt |
475 |
Q |
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| T |
21412553 |
caaatcctgaaagagagaacatttctaccttagcttataagtcaatgtt |
21412601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 545 - 621
Target Start/End: Original strand, 49712174 - 49712250
Alignment:
| Q |
545 |
gatttgagaacatcaccatcagcaacatcatcacccaaactaacatcctcttcatggacattcttctacaataaaag |
621 |
Q |
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| T |
49712174 |
gatttgagagcaccaccatcaacgacaccatcaaccaaactaacatcctcttcatggacattcttctacaataaaag |
49712250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 427 - 505
Target Start/End: Original strand, 20459 - 20535
Alignment:
| Q |
427 |
caaatcctgaaagagagaacatttctactttaacttatacatcaatgttataggatcacatcacttaacataatcaata |
505 |
Q |
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|||||||||||||||||||||||||||| ||| |||||| ||| ||||||| || || |||||||||| |||||||| |
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| T |
20459 |
caaatcctgaaagagagaacatttctaccttagcttataagtca--gttatagcataacgtcacttaacacaatcaata |
20535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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