View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_20 (Length: 402)
Name: NF1380_low_20
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 45362615 - 45362243
Alignment:
| Q |
1 |
ttaattgtgcatacctttctccatgaaaagtttccacttattaaagtgctttctgaaacaataaatatccttggtcattgataatccacatgaatgaacc |
100 |
Q |
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| T |
45362615 |
ttaattgtgcatacctttctccatgaaaagtttccacttattaaagtgctttctgaaacaataaatatccttggtcattgataatccacatgaatgaacc |
45362516 |
T |
|
| Q |
101 |
ggtccttcagcattattttacaaagaagctttacttttgcaatatgatgtggttggtttagattcaataaaatttaaaattcctaagtgaaagacacagt |
200 |
Q |
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| T |
45362515 |
ggtccttcagcattattttacaaagaagctttacttttgcaatatgatgtggttggtttagattcaataaaatttaaaattcctaagtgaaagacacagt |
45362416 |
T |
|
| Q |
201 |
agatattagattttggtactacagacagaactttcacactannnnnnnnggactgggattactgtttattgttgttgtaatttgtgaggtttgaagaatc |
300 |
Q |
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| T |
45362415 |
agatattagattttggtactacagacagaactttcacactattttttttggactgggattactgtttattgttgttgtaatttgtgaggtttgaagaatc |
45362316 |
T |
|
| Q |
301 |
tttgtcttgaatttgattcctgcatggacggaactaagtatgtgacaaaagtggctatcgccacccttaatat |
373 |
Q |
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| T |
45362315 |
tttgtcttgaatttgattcctgcatggacggaactaagtatgtgacaaaagtggctatcgccacccttaatat |
45362243 |
T |
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