View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1380_low_21 (Length: 385)

Name: NF1380_low_21
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1380_low_21
NF1380_low_21
[»] chr5 (5 HSPs)
chr5 (29-373)||(5775465-5775793)
chr5 (32-198)||(5768815-5768981)
chr5 (205-241)||(40197703-40197739)
chr5 (202-235)||(39074999-39075032)
chr5 (206-240)||(3247769-3247803)
[»] chr1 (5 HSPs)
chr1 (202-243)||(15646121-15646162)
chr1 (202-238)||(14321104-14321140)
chr1 (202-243)||(27858777-27858818)
chr1 (202-243)||(34767266-34767307)
chr1 (213-241)||(33776679-33776707)
[»] chr7 (1 HSPs)
chr7 (205-243)||(28749909-28749947)
[»] chr4 (7 HSPs)
chr4 (205-243)||(27924067-27924105)
chr4 (206-240)||(32004408-32004442)
chr4 (202-240)||(35803586-35803624)
chr4 (205-238)||(16467932-16467965)
chr4 (210-241)||(55292373-55292404)
chr4 (210-238)||(38179832-38179860)
chr4 (202-242)||(47769648-47769688)
[»] chr2 (3 HSPs)
chr2 (206-241)||(37807232-37807267)
chr2 (202-243)||(37985140-37985181)
chr2 (202-238)||(5963946-5963982)
[»] scaffold0024 (1 HSPs)
scaffold0024 (205-270)||(36209-36272)
[»] chr6 (3 HSPs)
chr6 (202-247)||(27133906-27133951)
chr6 (213-242)||(3807889-3807918)
chr6 (205-242)||(23898842-23898879)
[»] chr3 (3 HSPs)
chr3 (206-238)||(24924627-24924659)
chr3 (206-238)||(51672506-51672538)
chr3 (213-247)||(52201288-52201322)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 29 - 373
Target Start/End: Original strand, 5775465 - 5775793
Alignment:
Q  29 acccaagtataaatagaggcaaaacaaacaaattaatcataactgttatgcaaataataacagtgtaaattttgtttagacaactattgaatcaaatcaa 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5775465 acccaagtataaatagaggcaaaacaaacaaattaatcataactgttatgcaaataataacagtgtaaattttgtttagacaattattgaatcaaatcaa 5775564  T
Q  129 atcacattataatcataatctcttacaacaattatagaaaccctaatctagtatttgattttttcagtgtttatttcaatgcataatttctatattaatc 228  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5775565 atcacattataatcataatctcttacaataagtatagaaaccctaatctagtgtttgattttttcagtgtttatttcaatgcataatttctatattaatc 5775664  T
Q  229 ttcttaactagtgccttaaaaagacactagttaacattttcccttaatttttaaccatatacatcaactttttaaccatcattttatttatactggcgtt 328  Q
    |||||||||||||||                ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5775665 ttcttaactagtgcc----------------taacattttccattaatttttaaccatatacatcaactttttaaccatcattttatttatactggcgtt 5775748  T
Q  329 ggatttcagtttatttataaaggcattggatttcacatggagtat 373  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  5775749 ggatttcactttatttataaaggcattggatttcacatggagtat 5775793  T

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Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 32 - 198
Target Start/End: Original strand, 5768815 - 5768981
Alignment:
Q  32 caagtataaatagaggcaaaacaaacaaattaatcataactgttatgcaaataataacagtgtaaattttgtttagacaactattgaatcaaatcaaatc 131  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  5768815 caagtataaacagaggcaaaataaacaaattaatcataactgttatgcaaataataacagtgtaaattttgtttagacaactacagaattaaatcaaatc 5768914  T
Q  132 acattataatcataatctcttacaacaattatagaaaccctaatctagtatttgattttttcagtgt 198  Q
    | |||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||||    
T  5768915 atattataatcatagtctcttacgacaagtatagaaaccctaatctagtgtttgattttttcagtgt 5768981  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 40197703 - 40197739
Alignment:
Q  205 caatgcataatttctatattaatcttcttaactagtg 241  Q
    |||||||||||||||||||||||||||||||||||||    
T  40197703 caatgcataatttctatattaatcttcttaactagtg 40197739  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 39075032 - 39074999
Alignment:
Q  202 tttcaatgcataatttctatattaatcttcttaa 235  Q
    ||||||||||||||||||||||||||||||||||    
T  39075032 tttcaatgcataatttctatattaatcttcttaa 39074999  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 3247769 - 3247803
Alignment:
Q  206 aatgcataatttctatattaatcttcttaactagt 240  Q
    ||||||||| |||||||||||||||||||||||||    
T  3247769 aatgcataacttctatattaatcttcttaactagt 3247803  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 15646162 - 15646121
Alignment:
Q  202 tttcaatgcataatttctatattaatcttcttaactagtgcc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  15646162 tttcaatgcataatttctatattaatcttcttaactagtgcc 15646121  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 14321104 - 14321140
Alignment:
Q  202 tttcaatgcataatttctatattaatcttcttaacta 238  Q
    |||||||||||||||||||||||||||||||||||||    
T  14321104 tttcaatgcataatttctatattaatcttcttaacta 14321140  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 27858777 - 27858818
Alignment:
Q  202 tttcaatgcataatttctatattaatcttcttaactagtgcc 243  Q
    |||||| ||||||||| ||||||||||||||||| |||||||    
T  27858777 tttcaacgcataatttttatattaatcttcttaattagtgcc 27858818  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 34767307 - 34767266
Alignment:
Q  202 tttcaatgcataatttctatattaatcttcttaactagtgcc 243  Q
    |||||| ||||||||| |||||||||||||||||||| ||||    
T  34767307 tttcaaggcataatttttatattaatcttcttaactaatgcc 34767266  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 241
Target Start/End: Complemental strand, 33776707 - 33776679
Alignment:
Q  213 aatttctatattaatcttcttaactagtg 241  Q
    |||||||||||||||||||||||||||||    
T  33776707 aatttctatattaatcttcttaactagtg 33776679  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 28749947 - 28749909
Alignment:
Q  205 caatgcataatttctatattaatcttcttaactagtgcc 243  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28749947 caatgcataatttctatattaatcttcttaactagtgcc 28749909  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 27924067 - 27924105
Alignment:
Q  205 caatgcataatttctatattaatcttcttaactagtgcc 243  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27924067 caatgcataatttctatattaatcttcttaactagtgcc 27924105  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 32004442 - 32004408
Alignment:
Q  206 aatgcataatttctatattaatcttcttaactagt 240  Q
    |||||||||||||||||||||||||||||||||||    
T  32004442 aatgcataatttctatattaatcttcttaactagt 32004408  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 35803586 - 35803624
Alignment:
Q  202 tttcaatgcataatttctatattaatcttcttaactagt 240  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  35803586 tttcaatgcataatttctatattaaacttcttaactagt 35803624  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 16467932 - 16467965
Alignment:
Q  205 caatgcataatttctatattaatcttcttaacta 238  Q
    ||||||||||||||||||||||||||||||||||    
T  16467932 caatgcataatttctatattaatcttcttaacta 16467965  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 241
Target Start/End: Original strand, 55292373 - 55292404
Alignment:
Q  210 cataatttctatattaatcttcttaactagtg 241  Q
    ||||||||||||||||||||||||||||||||    
T  55292373 cataatttctatattaatcttcttaactagtg 55292404  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 38179860 - 38179832
Alignment:
Q  210 cataatttctatattaatcttcttaacta 238  Q
    |||||||||||||||||||||||||||||    
T  38179860 cataatttctatattaatcttcttaacta 38179832  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 47769688 - 47769648
Alignment:
Q  202 tttcaatgcataatttctatattaatcttcttaactagtgc 242  Q
    ||||||| |||||||| |||||||||||| |||||||||||    
T  47769688 tttcaatacataatttttatattaatctttttaactagtgc 47769648  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 37807267 - 37807232
Alignment:
Q  206 aatgcataatttctatattaatcttcttaactagtg 241  Q
    ||||||||||||||||||||||||||||||||||||    
T  37807267 aatgcataatttctatattaatcttcttaactagtg 37807232  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 37985181 - 37985140
Alignment:
Q  202 tttcaatgcataatttctatattaatcttcttaactagtgcc 243  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  37985181 tttcaatgtataatttctatattaatcttattaactagtgcc 37985140  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 5963982 - 5963946
Alignment:
Q  202 tttcaatgcataatttctatattaatcttcttaacta 238  Q
    |||||||||||||||| |||||||||||| |||||||    
T  5963982 tttcaatgcataatttttatattaatctttttaacta 5963946  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 36272 - 36209
Alignment:
Q  205 caatgcataatttctatattaatcttcttaactagtgccttaaaaagacactagttaacattttcc 270  Q
    |||||||||||||||||| || ||||||||||||||||| |  || ||||||||||| ||||||||    
T  36272 caatgcataatttctataatagtcttcttaactagtgccct--aaggacactagttagcattttcc 36209  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 27133951 - 27133906
Alignment:
Q  202 tttcaatgcataatttctatattaatcttcttaactagtgccttaa 247  Q
    |||||||||| |||| ||||||||||||||||||||| ||||||||    
T  27133951 tttcaatgcaaaattactatattaatcttcttaactaatgccttaa 27133906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 242
Target Start/End: Complemental strand, 3807918 - 3807889
Alignment:
Q  213 aatttctatattaatcttcttaactagtgc 242  Q
    ||||||||||||||||||||||||||||||    
T  3807918 aatttctatattaatcttcttaactagtgc 3807889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 23898842 - 23898879
Alignment:
Q  205 caatgcataatttctatattaatcttcttaactagtgc 242  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  23898842 caatacataatttctatgttaatcttcttaactagtgc 23898879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 24924627 - 24924659
Alignment:
Q  206 aatgcataatttctatattaatcttcttaacta 238  Q
    |||||||||||||||||||||||||||||||||    
T  24924627 aatgcataatttctatattaatcttcttaacta 24924659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 51672538 - 51672506
Alignment:
Q  206 aatgcataatttctatattaatcttcttaacta 238  Q
    |||||||||||||||||||||||||||||||||    
T  51672538 aatgcataatttctatattaatcttcttaacta 51672506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 52201322 - 52201288
Alignment:
Q  213 aatttctatattaatcttcttaactagtgccttaa 247  Q
    ||||| |||||||||||||||||||||||||||||    
T  52201322 aatttatatattaatcttcttaactagtgccttaa 52201288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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