View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_26 (Length: 350)
Name: NF1380_low_26
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 3 - 204
Target Start/End: Complemental strand, 27141877 - 27141679
Alignment:
| Q |
3 |
agatagtttatataaggcacaaattagaaacttcaatttaaacttgcacttacaacaatatatatggtgtaagaagctaaattggttcgaacctgagacc |
102 |
Q |
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| T |
27141877 |
agatagtttatataaggcacaagttagaaacttcaatttaaacttgcacttacaacaatatat--ggtgtaagaagctaaattgatttaaatctgagacc |
27141780 |
T |
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| Q |
103 |
ttgaagaaaagcatactttcaagttttaagtcaatatcatcaagctaacccaaatgggttcacttacaatatagtgttatatatggaattcattaaatca |
202 |
Q |
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| T |
27141779 |
ttgaagaagagcacacttccaaaatttaagtcaatatcaccaagctaacccaaatgggttcacttacaatatagt-ttatatatggaattcattaaatca |
27141681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 27141645 - 27141571
Alignment:
| Q |
270 |
ggttgtagtaatttttgaataaatattgtagtcaaccatagtcaaactaggaataatacacactagaataatcta |
344 |
Q |
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| T |
27141645 |
ggttgtagtaatttttgaataaatattgtagtcaaccatagtcaaactaggaataatacacactagaacaatcta |
27141571 |
T |
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