View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_28 (Length: 343)
Name: NF1380_low_28
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 30 - 336
Target Start/End: Original strand, 30942238 - 30942542
Alignment:
| Q |
30 |
caaaagacttacgttaaacagtccgaagggtatgcatttttccttctctcaatgttgtattaaattttggcatatttcaataagtttatagtctagaact |
129 |
Q |
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| T |
30942238 |
caaaagacttacgttacgcagtccgaagggtatgcatttttccttctctcaatgttgtattaaattttggcttatttcaataagtttatggtctagaact |
30942337 |
T |
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| Q |
130 |
tatttgcaaataatttattaacagcattttcgatttgattataaatactttatacctaaatactaagatctaagacctattcattttacatttaattaag |
229 |
Q |
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| T |
30942338 |
t--ttgcaaataatttattaacaacattttcgatttgattataaatactttatacctaaatactaagatctaagacctattcattttgcatttaattaag |
30942435 |
T |
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| Q |
230 |
ttcttccacacaagttcaccctttacattttcttattttggatggtgatattgaattttaggacttgaatccactctagcacgctagctaggttgagctt |
329 |
Q |
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| T |
30942436 |
ttcttccacacaagttcaccctttacattttcttattttggatggtgatattgaattttaggacttgaatccactctagcacgctagctaggttgagctt |
30942535 |
T |
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| Q |
330 |
catatca |
336 |
Q |
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| T |
30942536 |
catatca |
30942542 |
T |
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