View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_30 (Length: 340)
Name: NF1380_low_30
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 33695401 - 33695075
Alignment:
| Q |
1 |
aatatcaggccttaaataattggtccaccttagcctacaactctttccacatctattaagacctgcaaaattgcaagnnnnnnnnnnnngaatgaggagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33695401 |
aatatcaggccttaaataattggtccaccttagcctacaactctttccacatctattaagacctgcaaaattgcaagaaaaaataaaaataatgaggagt |
33695302 |
T |
|
| Q |
101 |
tatcaagtgaaaatagaaactatatattaatagttattgcaacatatagagatatgataaatatacaaaccagctagcttagggagtgctctccaacttc |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33695301 |
tatccagtgaaaatagaaactatatattaatagttattgcaacatatagagatataataaatatacaaaccagctagcttagggagtgctctccaacttc |
33695202 |
T |
|
| Q |
201 |
catggccatgttgctgaatgtgttcaactagcttttgatcttcttcgggagtccaaggtcctttctttaggccactctcatcacaacatggggaccttcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33695201 |
catggccatgttgctgaatgtgttcaactagcttttgatcttcttcaggagtccaaggtcctttctttaggccactctcatcacaacatggggaccttcc |
33695102 |
T |
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| Q |
301 |
cattgtgtgttactattattatttcct |
327 |
Q |
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|||||||||||||||||||| |||||| |
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| T |
33695101 |
cattgtgtgttactattattctttcct |
33695075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1281386 - 1281333
Alignment:
| Q |
1 |
aatatcaggccttaaataattggtccaccttagcctacaactctttccacatct |
54 |
Q |
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||||||||| ||||||||||| ||||| |||| ||||||||||||||||||||| |
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| T |
1281386 |
aatatcaggacttaaataatttgtccatcttaacctacaactctttccacatct |
1281333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 12552027 - 12551972
Alignment:
| Q |
2 |
atatcaggccttaaataattggtccaccttagcctacaactctttccacatctatt |
57 |
Q |
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||||||||||| |||||||| |||||||||| |||||||||||| ||||| ||||| |
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| T |
12552027 |
atatcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctatt |
12551972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1319332 - 1319388
Alignment:
| Q |
1 |
aatatcaggccttaaataattggtccaccttagcctacaactctttccacatctatt |
57 |
Q |
| |
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|||||||||||||| |||||| |||| || || ||||||||||||||||||||||| |
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| T |
1319332 |
aatatcaggccttagataattattccatctaagtctacaactctttccacatctatt |
1319388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 1319411 - 1319478
Alignment:
| Q |
188 |
gctctccaacttccatggccatgttgctgaatgtgttcaactagcttttgatcttcttcgggagtcca |
255 |
Q |
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| T |
1319411 |
gctctccaacttccatggccatgtttctgaatgtgatccactaatattttatcttcttctggactcca |
1319478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 30007235 - 30007186
Alignment:
| Q |
173 |
gctagcttagggagtgctctccaacttccatggccatgttgctgaatgtg |
222 |
Q |
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| T |
30007235 |
gctagctttggaagtgctctccaacttccatggccatgtttcttaatgtg |
30007186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 7898730 - 7898786
Alignment:
| Q |
242 |
tcttcgggagtccaaggtcctttctttaggccactctcatcacaacatggggacctt |
298 |
Q |
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||||| || ||||||||||||||||| ||| || |||||||||| |||||||||||| |
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| T |
7898730 |
tcttcaggggtccaaggtcctttcttaaggtcattctcatcacagcatggggacctt |
7898786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 45438056 - 45437996
Alignment:
| Q |
4 |
atcaggccttaaataattggtccaccttagcctacaactctttccacatctattaagacct |
64 |
Q |
| |
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|||||||||||| ||||| ||||||| |||||||| ||||| |||||||| | ||||||| |
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| T |
45438056 |
atcaggccttaagtaattaatccacctaagcctacagctcttaccacatctttgaagacct |
45437996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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