View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_31 (Length: 337)
Name: NF1380_low_31
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 161 - 325
Target Start/End: Original strand, 4108064 - 4108227
Alignment:
| Q |
161 |
tatgtacatttatttcatcaatgttcctacatcaattatcatgagtaaaaaattctaccttacataacatcgttgctactataccaacacctcatacagt |
260 |
Q |
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| T |
4108064 |
tatgtacatttatttcatcaatgttcctacatgaattatcatgagtaaaaaattctaccttacataacatcgttgctactataccaacacctcatacagt |
4108163 |
T |
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| Q |
261 |
atttcataaagtatcttatgaaataaaaagcccttataaacgcttatatcgtatctatacatttt |
325 |
Q |
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| T |
4108164 |
atttcataaagtatcttatgaaat-aaaagcccttataaacccttatatcgtatctatacatttt |
4108227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 34779478 - 34779519
Alignment:
| Q |
98 |
cttaaagtgcttcattgttacaacggaagcatcaaagctttc |
139 |
Q |
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| T |
34779478 |
cttaaagtgcttcattgttacaacggaagcatcaaagctttc |
34779519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 34682899 - 34682858
Alignment:
| Q |
98 |
cttaaagtgcttcattgttacaacggaagcatcaaagctttc |
139 |
Q |
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| T |
34682899 |
cttaaagtgcttcattgttacaacggaagcatcaaagttttc |
34682858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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