View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_32 (Length: 331)
Name: NF1380_low_32
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 30 - 320
Target Start/End: Complemental strand, 3237589 - 3237299
Alignment:
| Q |
30 |
ctaaagtgctataaattgtgactcattattcttgagcaactactatttgacagtaaaagaactcattcaacattcaagcctagcataacttctgtgagat |
129 |
Q |
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| T |
3237589 |
ctaaagtgctataaattgtgactcgttattcttgagcaactactatttgacagtaaaagaactcattcaacattcaagcctagcataacttctgtgagat |
3237490 |
T |
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| Q |
130 |
gaattttcaaggtgcaaagcaaatgtacagaaatttaaagtatctatgtaagcagttaaaaatcttggattggatatgataacaaagtattccatcattc |
229 |
Q |
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| T |
3237489 |
gaattttcaaggtgcaaagcaaatgtacagaaatttaaagtatctatgtaagcagttaaaaatcttggattggatatgataacaaagtattccatcattc |
3237390 |
T |
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| Q |
230 |
cattctaaacttgtccagactccacagtaaaaagaactatcaaagtgtgtattcacacaactaattgttcacaagctaaagagttattcat |
320 |
Q |
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| T |
3237389 |
cattctaaacttgtacaaactccacagtaaaaagaactatcaaagtgtgtattcacacaactaattgttcacaagctaaagagttattcat |
3237299 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 39930951 - 39931067
Alignment:
| Q |
54 |
attattcttgagcaactactatttgacagtaaaagaactcattcaacattcaa-gcctagcataacttctgtgagatgaa-ttttcaaggtgcaaagcaa |
151 |
Q |
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||||||||||||| | ||||||| ||||||||| |||||| |||| | ||||| |||||||||||||| || ||||||| ||||| ||||| ||||||| |
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| T |
39930951 |
attattcttgagccattactatt-gacagtaaa-gaactcgttcatctttcaaagcctagcataactt--gttagatgaaattttccaggtggaaagcaa |
39931046 |
T |
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| Q |
152 |
atgtacagaaatttaaagtat |
172 |
Q |
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| T |
39931047 |
atgtaaaggaatttaaagtat |
39931067 |
T |
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