View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1380_low_35 (Length: 317)

Name: NF1380_low_35
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1380_low_35
NF1380_low_35
[»] chr3 (24 HSPs)
chr3 (30-261)||(25850745-25850977)
chr3 (261-309)||(20431470-20431518)
chr3 (251-310)||(8115335-8115394)
chr3 (258-309)||(25850996-25851047)
chr3 (251-309)||(18457152-18457210)
chr3 (260-309)||(34276487-34276536)
chr3 (260-309)||(12517288-12517337)
chr3 (260-309)||(13938896-13938945)
chr3 (269-309)||(8881460-8881500)
chr3 (258-309)||(14977804-14977855)
chr3 (258-309)||(16228392-16228443)
chr3 (258-309)||(19909077-19909128)
chr3 (184-231)||(35508327-35508374)
chr3 (267-309)||(1096817-1096859)
chr3 (267-309)||(16242250-16242292)
chr3 (260-310)||(19912577-19912627)
chr3 (260-309)||(8145246-8145295)
chr3 (262-309)||(8765672-8765719)
chr3 (262-309)||(8770562-8770609)
chr3 (274-309)||(19170052-19170087)
chr3 (260-301)||(2166084-2166125)
chr3 (232-261)||(22470402-22470431)
chr3 (269-301)||(20021876-20021908)
chr3 (269-309)||(27073950-27073990)
[»] scaffold0019 (1 HSPs)
scaffold0019 (258-309)||(182559-182610)
[»] chr2 (14 HSPs)
chr2 (258-309)||(24086354-24086405)
chr2 (258-309)||(25532234-25532285)
chr2 (260-309)||(18758299-18758348)
chr2 (258-309)||(18120593-18120644)
chr2 (258-309)||(25196609-25196660)
chr2 (258-309)||(20379284-20379335)
chr2 (260-310)||(28918185-28918235)
chr2 (258-302)||(20853086-20853130)
chr2 (258-309)||(25537554-25537605)
chr2 (251-309)||(17350976-17351034)
chr2 (260-306)||(26313179-26313225)
chr2 (260-309)||(22569052-22569101)
chr2 (232-260)||(17891800-17891828)
chr2 (233-261)||(18120546-18120574)
[»] chr6 (22 HSPs)
chr6 (262-309)||(17822076-17822123)
chr6 (251-309)||(19577578-19577636)
chr6 (252-309)||(21152533-21152590)
chr6 (251-309)||(9519730-9519788)
chr6 (251-309)||(14641630-14641688)
chr6 (251-309)||(19594017-19594075)
chr6 (260-309)||(14078035-14078084)
chr6 (260-309)||(22404304-22404353)
chr6 (272-309)||(24469796-24469833)
chr6 (258-309)||(11136916-11136967)
chr6 (258-309)||(20004228-20004279)
chr6 (262-308)||(14723683-14723729)
chr6 (260-309)||(24480022-24480071)
chr6 (269-309)||(18171312-18171352)
chr6 (251-306)||(1636635-1636689)
chr6 (262-305)||(17384025-17384068)
chr6 (266-309)||(21760463-21760506)
chr6 (258-309)||(23005294-23005345)
chr6 (251-309)||(14076394-14076452)
chr6 (267-309)||(17847778-17847820)
chr6 (232-261)||(21687129-21687158)
chr6 (269-309)||(22411462-22411502)
[»] chr1 (26 HSPs)
chr1 (258-309)||(18734633-18734684)
chr1 (258-309)||(22426563-22426614)
chr1 (258-309)||(22624614-22624665)
chr1 (258-309)||(26611379-26611430)
chr1 (260-309)||(729134-729183)
chr1 (260-309)||(15542358-15542407)
chr1 (262-309)||(22507434-22507481)
chr1 (258-301)||(25402483-25402526)
chr1 (260-309)||(9403632-9403681)
chr1 (268-309)||(18832213-18832254)
chr1 (260-309)||(21450765-21450814)
chr1 (251-295)||(15158829-15158873)
chr1 (258-309)||(16817156-16817207)
chr1 (262-309)||(18527548-18527595)
chr1 (260-306)||(12210266-12210312)
chr1 (275-309)||(15630988-15631022)
chr1 (275-309)||(16915261-16915295)
chr1 (260-309)||(21663140-21663189)
chr1 (258-298)||(20107863-20107903)
chr1 (262-309)||(21333123-21333170)
chr1 (230-260)||(15542306-15542336)
chr1 (267-309)||(16180716-16180757)
chr1 (232-261)||(24464682-24464711)
chr1 (232-260)||(15526806-15526834)
chr1 (232-260)||(27912133-27912161)
chr1 (180-232)||(34738762-34738814)
[»] scaffold0016 (1 HSPs)
scaffold0016 (260-309)||(4822-4871)
[»] chr8 (24 HSPs)
chr8 (260-309)||(15176482-15176531)
chr8 (258-309)||(24583219-24583270)
chr8 (260-309)||(17510902-17510951)
chr8 (260-309)||(18446909-18446958)
chr8 (262-309)||(13313323-13313370)
chr8 (258-309)||(19265820-19265871)
chr8 (258-309)||(23867877-23867928)
chr8 (258-309)||(25481553-25481604)
chr8 (258-309)||(26139786-26139837)
chr8 (262-309)||(29381013-29381060)
chr8 (267-309)||(20400332-20400374)
chr8 (251-309)||(29765433-29765491)
chr8 (252-309)||(26888484-26888541)
chr8 (262-309)||(24090930-24090977)
chr8 (260-309)||(19704984-19705033)
chr8 (232-263)||(19705052-19705083)
chr8 (251-306)||(24389757-24389812)
chr8 (251-306)||(24520043-24520098)
chr8 (258-309)||(26829514-26829565)
chr8 (279-309)||(24388441-24388471)
chr8 (232-261)||(21695413-21695442)
chr8 (230-263)||(24389822-24389855)
chr8 (230-263)||(24518586-24518619)
chr8 (232-260)||(12342891-12342919)
[»] chr5 (18 HSPs)
chr5 (260-309)||(23387597-23387646)
chr5 (258-309)||(16521951-16522002)
chr5 (260-309)||(20860337-20860386)
chr5 (258-309)||(19006896-19006947)
chr5 (258-309)||(24658348-24658399)
chr5 (262-309)||(34132084-34132131)
chr5 (251-309)||(19003806-19003864)
chr5 (260-309)||(28666490-28666539)
chr5 (258-309)||(20548501-20548552)
chr5 (258-309)||(24142405-24142456)
chr5 (272-306)||(19053102-19053136)
chr5 (181-231)||(32746273-32746323)
chr5 (232-261)||(17831761-17831790)
chr5 (260-305)||(24320572-24320617)
chr5 (260-309)||(25920829-25920878)
chr5 (232-261)||(26315254-26315283)
chr5 (273-309)||(22797483-22797519)
chr5 (258-309)||(29987954-29988006)
[»] chr4 (15 HSPs)
chr4 (233-309)||(17108716-17108792)
chr4 (260-309)||(7583790-7583839)
chr4 (262-309)||(22171746-22171793)
chr4 (267-309)||(17335412-17335454)
chr4 (251-309)||(18750822-18750880)
chr4 (260-309)||(15166466-15166515)
chr4 (258-309)||(11252177-11252228)
chr4 (273-307)||(17218529-17218563)
chr4 (260-306)||(17711307-17711353)
chr4 (260-309)||(9536805-9536854)
chr4 (260-309)||(12616712-12616761)
chr4 (258-309)||(4617092-4617143)
chr4 (260-309)||(10106293-10106342)
chr4 (232-261)||(17277913-17277942)
chr4 (233-261)||(8968072-8968100)
[»] scaffold0258 (1 HSPs)
scaffold0258 (258-309)||(20300-20351)
[»] scaffold0451 (1 HSPs)
scaffold0451 (251-309)||(5728-5786)
[»] chr7 (26 HSPs)
chr7 (260-309)||(11804696-11804745)
chr7 (251-307)||(19201458-19201514)
chr7 (262-309)||(10611711-10611758)
chr7 (267-309)||(18986801-18986843)
chr7 (267-309)||(19001429-19001471)
chr7 (260-309)||(8052478-8052527)
chr7 (260-309)||(8977520-8977569)
chr7 (258-309)||(2927872-2927923)
chr7 (258-309)||(9978283-9978334)
chr7 (251-309)||(5236907-5236965)
chr7 (251-309)||(9078923-9078981)
chr7 (251-309)||(23173726-23173784)
chr7 (260-309)||(3585572-3585621)
chr7 (260-309)||(4450669-4450718)
chr7 (260-309)||(13280757-13280806)
chr7 (258-303)||(39270320-39270365)
chr7 (277-309)||(8317508-8317540)
chr7 (230-261)||(13280827-13280858)
chr7 (258-309)||(13287758-13287809)
chr7 (231-260)||(7399396-7399425)
chr7 (232-261)||(9078881-9078910)
chr7 (232-261)||(10332472-10332501)
chr7 (268-309)||(20577502-20577543)
chr7 (232-261)||(20577559-20577588)
chr7 (232-261)||(23173685-23173714)
chr7 (260-301)||(26249125-26249166)
[»] scaffold0002 (1 HSPs)
scaffold0002 (267-309)||(95622-95664)
[»] scaffold0056 (1 HSPs)
scaffold0056 (268-307)||(23036-23075)
[»] scaffold0555 (1 HSPs)
scaffold0555 (262-309)||(6451-6498)
[»] scaffold0032 (1 HSPs)
scaffold0032 (251-306)||(92869-92924)
[»] scaffold0024 (1 HSPs)
scaffold0024 (251-309)||(41337-41395)
[»] scaffold0111 (1 HSPs)
scaffold0111 (260-309)||(21438-21487)
[»] scaffold0043 (1 HSPs)
scaffold0043 (232-261)||(88436-88465)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 30 - 261
Target Start/End: Original strand, 25850745 - 25850977
Alignment:
Q  30 catttcacataacaaaatagtgattgattctaagacattttatccatatgttttttcgtcaaaagaacataaccaataattgattgatatttaaaactta 129  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25850745 catttcacataacaaaatagtgattgattctaagacattttaaccatat-ttttttcgtcaaaagaagataaccaataattgattgatatttaaaactta 25850843  T
Q  130 atttaagtaaatgcatataagatcaattt--tnnnnnnngattatgcgatatatagagtttaatggtggttggttgacaatacaaaacaaccttgcacat 227  Q
    |||||||||||||| ||||||||||||||           || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25850844 atttaagtaaatgcgtataagatcaatttaaaaaaaataaataatgtgatatatagagtttaatggtggttggttgacaatacaaaacaaccttgcacac 25850943  T
Q  228 acaatgatgacatgtcatcttacgttattcttag 261  Q
    ||||||| |||| ||||||||| |||||||||||    
T  25850944 acaatgaagacaggtcatcttatgttattcttag 25850977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 20431518 - 20431470
Alignment:
Q  261 gtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20431518 gtaggttttagcagcaaaaaggaggagtattagaacgattgcctatgat 20431470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 8115335 - 8115394
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgata 310  Q
    |||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  8115335 gttattttgagtaggttttagtagcaaaaaggaggagtattagaacgattgcctatgata 8115394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 25850996 - 25851047
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  25850996 ttagtaggatttagcagcagaaaggaggagtattaaaacgattgcctatgat 25851047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 18457152 - 18457210
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| | |||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  18457152 gttattttcagtaggttttagcagcaaaaaggaggagtattagaacaattgcctatgat 18457210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 34276487 - 34276536
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  34276487 agtaggttttagcagcaaaaaggaggagtattataacgattgcctatgat 34276536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 12517337 - 12517288
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  12517337 agtaggttttagtagcaaaaaggaggagtattagaatgattgcctatgat 12517288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 13938896 - 13938945
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| |||||    
T  13938896 agtaggttttagcaccaaaaaggaggagtattagaacgattgccaatgat 13938945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 8881460 - 8881500
Alignment:
Q  269 tagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  8881460 tagcaacaaaaaggaggagtattagaacgattgcctatgat 8881500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 14977855 - 14977804
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| ||||||| |||||||||||||||||||| ||| ||||||||||||    
T  14977855 ttagtatgatttagtagcaaaaaggaggagtattataacaattgcctatgat 14977804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 16228392 - 16228443
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  ||||| |||||||||||||||||||||| ||||||||||||    
T  16228392 ttagtaggaaatagcaacaaaaaggaggagtattagaactattgcctatgat 16228443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 19909077 - 19909128
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  ||||||||||||| |||||||||||||||||| ||||||||    
T  19909077 ttagtaggaaatagcagcaaaaagaaggagtattagaacgattccctatgat 19909128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 35508327 - 35508374
Alignment:
Q  184 agtttaatggtggttggttgacaatacaaaacaaccttgcacatacaa 231  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  35508327 agtttaatggtggtgggttgacaatccaaaacaactttgcacatacaa 35508374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 1096817 - 1096859
Alignment:
Q  267 tttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  1096817 tttagcagcaaaaaggaggattactagaacgattgcctatgat 1096859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 16242250 - 16242292
Alignment:
Q  267 tttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  16242250 tttagcagaaaaaagaaggagtattagaacgattgcctatgat 16242292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 19912627 - 19912577
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgata 310  Q
    |||||| |||||||||||||| ||||||||||||||||||||  |||||||    
T  19912627 agtaggttttagcagcaaaaaagaggagtattagaacgattgtgtatgata 19912577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 8145295 - 8145246
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||||||||| ||||||||||| ||| ||||||||||||    
T  8145295 agtaggttttagcagcaaaaatgaggagtattaaaacaattgcctatgat 8145246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 8765719 - 8765672
Alignment:
Q  262 taggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||| |||||| ||||||| ||||||||||||||||||| ||||||||    
T  8765719 taggttttagctgcaaaaaagaggagtattagaacgatttcctatgat 8765672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 8770609 - 8770562
Alignment:
Q  262 taggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||| |||||| ||||||| ||||||||||||||||||| ||||||||    
T  8770609 taggttttagctgcaaaaaagaggagtattagaacgatttcctatgat 8770562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 309
Target Start/End: Complemental strand, 19170087 - 19170052
Alignment:
Q  274 gcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||||||||||| |||||||||||||||    
T  19170087 gcaaaaaggaggagtattagcacgattgcctatgat 19170052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 2166084 - 2166125
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattg 301  Q
    |||||| ||||||| |||||||||||||||||| ||||||||    
T  2166084 agtaggttttagcaacaaaaaggaggagtattaaaacgattg 2166125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 22470402 - 22470431
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  22470402 tgatgacatgtcatcttacgttattcttag 22470431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 20021876 - 20021908
Alignment:
Q  269 tagcagcaaaaaggaggagtattagaacgattg 301  Q
    ||||||||||| |||||||||||||||||||||    
T  20021876 tagcagcaaaatggaggagtattagaacgattg 20021908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 27073990 - 27073950
Alignment:
Q  269 tagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||||||| |||||||||||||||| ||| ||||||||    
T  27073990 tagcagcaaaatggaggagtattagaacaattccctatgat 27073950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 182559 - 182610
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  182559 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 182610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 24086354 - 24086405
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24086354 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 24086405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 25532285 - 25532234
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  25532285 ttagtaggaaatagcagcaaaaaggaggagtattagaacgattgcctatgat 25532234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 18758348 - 18758299
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  18758348 agtaggttttagtagcaaaaaggaggagtattagaacgattgcctatgat 18758299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 18120593 - 18120644
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  ||||||||||| |||||||||||||||||||||||||||||    
T  18120593 ttagtaggaaatagcagcaaaatggaggagtattagaacgattgcctatgat 18120644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 25196660 - 25196609
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  25196660 ttagtaggatttagcagcaaaaaagagaagtattaaaacgattgcctatgat 25196609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 20379335 - 20379284
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  ||| ||||||||||||||||||||||||||||| |||||||    
T  20379335 ttagtaggaaataggagcaaaaaggaggagtattagaacgattgtctatgat 20379284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 28918235 - 28918185
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgata 310  Q
    |||||| ||||||  |||||||||||||||||||||| |||||||||||||    
T  28918235 agtaggttttagctacaaaaaggaggagtattagaacaattgcctatgata 28918185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 20853130 - 20853086
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgc 302  Q
    |||||| || ||||| |||||||||||||||||||||||||||||    
T  20853130 ttagtaagaattagctgcaaaaaggaggagtattagaacgattgc 20853086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 25537605 - 25537554
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  || ||| ||||||||||||||||||| ||||||||||||||    
T  25537605 ttagtaggaaataacagtaaaaaggaggagtattagagcgattgcctatgat 25537554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 17351034 - 17350976
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| | |||||| ||||||| |||||| ||||||||||||||| |||| |||||||    
T  17351034 gttattttcagtaggttttagcaacaaaaatgaggagtattagaacaattgtctatgat 17350976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 26313225 - 26313179
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctat 306  Q
    |||||| ||||||||||||||| | ||||||||||||||| ||||||    
T  26313225 agtaggttttagcagcaaaaagaatgagtattagaacgatcgcctat 26313179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 22569101 - 22569052
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||| ||||| ||| ||||||||||||||| ||||||||    
T  22569101 agtaggttttagcagaaaaaatgagaagtattagaacgattacctatgat 22569052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 260
Target Start/End: Complemental strand, 17891828 - 17891800
Alignment:
Q  232 tgatgacatgtcatcttacgttattctta 260  Q
    |||||||||||||||||||||||||||||    
T  17891828 tgatgacatgtcatcttacgttattctta 17891800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 18120546 - 18120574
Alignment:
Q  233 gatgacatgtcatcttacgttattcttag 261  Q
    |||||||||||||||||||||||||||||    
T  18120546 gatgacatgtcatcttacgttattcttag 18120574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 17822076 - 17822123
Alignment:
Q  262 taggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17822076 taggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 17822123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 19577578 - 19577636
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19577578 gttattttcagtaggttttagcagcaaaaaggaggagtattagaacgattgcctatgat 19577636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 21152533 - 21152590
Alignment:
Q  252 ttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  21152533 ttatttttagtaggattaagcagcaaaaaggaggagtattagaacgattgtctatgat 21152590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 9519788 - 9519730
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| | ||||| ||||||||||||||||||||||||||||| | ||||||||||||    
T  9519788 gttattttcagtagtatttagcagcaaaaaggaggagtattagagcaattgcctatgat 9519730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 14641688 - 14641630
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| | |||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  14641688 gttattttcagtaggttttagcagcaaaaaggaggagtattagaacaattacctatgat 14641630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 19594017 - 19594075
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| | |||||| |||||| ||||||||||||||||||||||| ||||||||||||    
T  19594017 gttattttcagtaggttttagctgcaaaaaggaggagtattagaacaattgcctatgat 19594075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 14078084 - 14078035
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||||||||    
T  14078084 agtaggatttagcagcaaagaggaggagtattagagcaattgcctatgat 14078035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 22404304 - 22404353
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||||||||||||||||||||| |||||||| |||||||    
T  22404304 agtaggttttagcagcaaaaaggaggagtattaaaacgattgtctatgat 22404353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 24469833 - 24469796
Alignment:
Q  272 cagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24469833 cagcaaaaaggaggagtattagaacgattgcctatgat 24469796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 11136967 - 11136916
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||||| |||||||||||||| |||||||| |||||| ||||||    
T  11136967 ttagtaggatttagtagcaaaaaggaggattattagaatgattgcatatgat 11136916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 20004228 - 20004279
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||||| |||||||| ||||||| |||| |||||||||||||||    
T  20004228 ttagtaggatttagtagcaaaaaagaggagtgttagcacgattgcctatgat 20004279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 14723729 - 14723683
Alignment:
Q  262 taggatttagcagcaaaaaggaggagtattagaacgattgcctatga 308  Q
    |||||||||| ||||||||||||||||||||||| ||||| ||||||    
T  14723729 taggatttaggagcaaaaaggaggagtattagaatgattgtctatga 14723683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 24480071 - 24480022
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| ||| ||||||||||||||||||||| ||||||||| |||||||    
T  24480071 agtaggttttggcagcaaaaaggaggagtattggaacgattgtctatgat 24480022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 18171312 - 18171352
Alignment:
Q  269 tagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  18171312 tagcaccaaaaaggaggagtattagaatgattgcctatgat 18171352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 1636689 - 1636635
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctat 306  Q
    |||||| |||||||| |||||| |||||||||| |||||||||||| |||||||||    
T  1636689 gttatttttagtaggttttagcggcaaaaagga-gagtattagaacaattgcctat 1636635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 305
Target Start/End: Complemental strand, 17384068 - 17384025
Alignment:
Q  262 taggatttagcagcaaaaaggaggagtattagaacgattgccta 305  Q
    |||| |||||||||||||||||||||||||| || |||||||||    
T  17384068 taggttttagcagcaaaaaggaggagtattacaatgattgccta 17384025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 21760463 - 21760506
Alignment:
Q  266 atttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||    
T  21760463 atttagcagcaaaaaggaggattattagaatgatttcctatgat 21760506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 23005294 - 23005345
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  |||||  |||||||||||| |||||||||||||||||||||    
T  23005294 ttagtaggaaatagcacaaaaaaggaggagcattagaacgattgcctatgat 23005345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 14076452 - 14076394
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| | |||| |||||||||||||| |||||||||||||||   ||||||||||||    
T  14076452 gttattttcagtatgatttagcagcaaagaggaggagtattagagaaattgcctatgat 14076394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 17847820 - 17847778
Alignment:
Q  267 tttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||||| || ||||||||||||||||| |||||||    
T  17847820 tttagcagcaaaaatgaagagtattagaacgattgtctatgat 17847778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 21687129 - 21687158
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  21687129 tgatgacatgtcatcttacgttattcttag 21687158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 22411462 - 22411502
Alignment:
Q  269 tagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||||||||||||||| ||| |||| |||||||    
T  22411462 tagcagcaaaaaggaggagtattataacaattgtctatgat 22411502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 18734633 - 18734684
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18734633 ttagtaggatttaacagcaaaaaggaggagtattagaacgattgcctatgat 18734684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 22426563 - 22426614
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  22426563 ttagtaggaaatagcagcaaaaaggaggagtattagaacgattgcctatgat 22426614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 22624665 - 22624614
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  22624665 ttagtaggatttagcagcaaaaaggaggagtattaaaatgattgcctatgat 22624614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 26611379 - 26611430
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  26611379 ttagtaggatttagcagcaaaaaggaggagtattggaatgattgcctatgat 26611430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 729183 - 729134
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  729183 agtaggttttagcagcaaaaaggaggagtattagaacgattgtctatgat 729134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 15542358 - 15542407
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  15542358 agtaggttttagcagcaaaaagtaggagtattagaacgattgcctatgat 15542407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 22507434 - 22507481
Alignment:
Q  262 taggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||    
T  22507434 taggttttagcggcaaaaaggaggagtattagaacgattgcctatgat 22507481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 25402483 - 25402526
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattg 301  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  25402483 ttagtaggatttagcagcaaaaaagaggagtattagaacgattg 25402526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 9403681 - 9403632
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||||||||    
T  9403681 agtaggttttagcagcaaaaagaaggagtattagaacgtttgcctatgat 9403632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 18832254 - 18832213
Alignment:
Q  268 ttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  18832254 ttagcagcaaaaaggaggagtattagaacgattacctatgat 18832213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 21450814 - 21450765
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| ||||||||||||||||||||||||| ||| |||||||||||||    
T  21450814 agtaggttttagcagcaaaaaggaggagtattggaaagattgcctatgat 21450765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 15158829 - 15158873
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaa 295  Q
    |||||| | ||||||||||||||||||||||||||||||||||||    
T  15158829 gttattttaagtaggatttagcagcaaaaaggaggagtattagaa 15158873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 16817156 - 16817207
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  |||||||||||||||||||| ||||||| ||||||||||||    
T  16817156 ttagtaggaaatagcagcaaaaaggaggagtgttagaactattgcctatgat 16817207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 18527548 - 18527595
Alignment:
Q  262 taggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||| |||||| |||||||||||||||||||||| |||||||||||||    
T  18527548 taggttttagcggcaaaaaggaggagtattagaatgattgcctatgat 18527595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 12210312 - 12210266
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctat 306  Q
    |||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  12210312 agtaggttttagcagcaaaaaggaggagtattagaaagattgtctat 12210266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 309
Target Start/End: Original strand, 15630988 - 15631022
Alignment:
Q  275 caaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||||||||||||||||||||||||||    
T  15630988 caaaaaggaggagtattagaacgattgcctatgat 15631022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 309
Target Start/End: Original strand, 16915261 - 16915295
Alignment:
Q  275 caaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||||||||||||||||||||||||||    
T  16915261 caaaaaggaggagtattagaacgattgcctatgat 16915295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 21663140 - 21663189
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||| || |||||||||| ||||||||||||||||||||||||    
T  21663140 agtaggttttaacatcaaaaaggagaagtattagaacgattgcctatgat 21663189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 20107903 - 20107863
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacga 298  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  20107903 ttagtaggaaatagcagcaaaaaggaggagtattagaacga 20107863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 21333123 - 21333170
Alignment:
Q  262 taggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||| |||||||| ||||||||| ||||||| ||||||||||||||||    
T  21333123 taggttttagcaggaaaaaggagaagtattaaaacgattgcctatgat 21333170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 260
Target Start/End: Original strand, 15542306 - 15542336
Alignment:
Q  230 aatgatgacatgtcatcttacgttattctta 260  Q
    |||||||||||||||||||||||||||||||    
T  15542306 aatgatgacatgtcatcttacgttattctta 15542336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 16180757 - 16180716
Alignment:
Q  267 tttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
T  16180757 tttagcaacaaaaaggaggagtattagaac-attgcctatgat 16180716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 24464711 - 24464682
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  24464711 tgatgacatgtcatcttacgttattcttag 24464682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 260
Target Start/End: Original strand, 15526806 - 15526834
Alignment:
Q  232 tgatgacatgtcatcttacgttattctta 260  Q
    |||||||||||||||||||||||||||||    
T  15526806 tgatgacatgtcatcttacgttattctta 15526834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 260
Target Start/End: Complemental strand, 27912161 - 27912133
Alignment:
Q  232 tgatgacatgtcatcttacgttattctta 260  Q
    |||||||||||||||||||||||||||||    
T  27912161 tgatgacatgtcatcttacgttattctta 27912133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 34738814 - 34738762
Alignment:
Q  180 atagagtttaatggtggttggttgacaatacaaaacaaccttgcacatacaat 232  Q
    |||||||||||||||||| |||||||  | ||||||||  |||||||||||||    
T  34738814 atagagtttaatggtggtgggttgacggtccaaaacaattttgcacatacaat 34738762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 4871 - 4822
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4871 agtaggttttagcagcaaaaaggaggagtattagaacgattgcctatgat 4822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 15176482 - 15176531
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15176482 agtaggttttagcagcaaaaaggaggagtattagaacgattgcctatgat 15176531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 24583219 - 24583270
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  24583219 ttagtagattttagcagcaaaaaggaggagtattagaacgattgcctatgat 24583270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 17510951 - 17510902
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  17510951 agtaggttttagctgcaaaaaggaggagtattagaacgattgcctatgat 17510902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 18446909 - 18446958
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  18446909 agtaggatttagcagcaaaaaggaggagtattagaaccatttcctatgat 18446958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 13313323 - 13313370
Alignment:
Q  262 taggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  13313323 taggttttagcagcaaaaaggaggagtattagaacaattgcctatgat 13313370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 19265871 - 19265820
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||||||||    
T  19265871 ttagtaggatttaacaacaaaaaggaggagtattagaacaattgcctatgat 19265820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 23867877 - 23867928
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||| |||||||||||| | ||||||||||||||||||||||||||||    
T  23867877 ttagtaggttttagcagcaaagacgaggagtattagaacgattgcctatgat 23867928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 25481553 - 25481604
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  ||||||||||| |||||||||||||||||||||||||||||    
T  25481553 ttagtaggaaatagcagcaaaatggaggagtattagaacgattgcctatgat 25481604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 26139837 - 26139786
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||||||||    
T  26139837 ttagtaggaaatagcatcaaaaaggaggagtattagaacgattgcctatgat 26139786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 29381013 - 29381060
Alignment:
Q  262 taggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  29381013 taggttttagtagcaaaaaggaggagtattagaacgattgcctatgat 29381060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 20400374 - 20400332
Alignment:
Q  267 tttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  20400374 tttagcagcaaaaaggaggagtattagaacgatttcctatgat 20400332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 29765433 - 29765491
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| | |||||| ||||||||||||||||| | |||||||||||||||||||||||    
T  29765433 gttattttcagtaggttttagcagcaaaaaggaagtgtattagaacgattgcctatgat 29765491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Complemental strand, 26888541 - 26888484
Alignment:
Q  252 ttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||| |||||||| ||||||| ||||||||||||||||| ||||||||| |||||||    
T  26888541 ttatttttagtaggttttagcaacaaaaaggaggagtattggaacgattgtctatgat 26888484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 24090930 - 24090977
Alignment:
Q  262 taggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||| ||||||||||||||||| |||||||||||| ||||||||||||    
T  24090930 taggttttagcagcaaaaaggaagagtattagaacaattgcctatgat 24090977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 19705033 - 19704984
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||| ||||| |||| |||||||||||||||||||||||||||    
T  19705033 agtaggttttaacagcataaagaaggagtattagaacgattgcctatgat 19704984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 263
Target Start/End: Complemental strand, 19705083 - 19705052
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttagta 263  Q
    ||||||||||||||||||||||||||||||||    
T  19705083 tgatgacatgtcatcttacgttattcttagta 19705052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 24389812 - 24389757
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctat 306  Q
    |||||| | |||||| ||||||| |||||| ||||||||||||||| |||||||||    
T  24389812 gttattttcagtaggttttagcaacaaaaatgaggagtattagaacaattgcctat 24389757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 24520043 - 24520098
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctat 306  Q
    |||||| | |||||||||||| |||||||||||  ||||||||||| |||||||||    
T  24520043 gttattttcagtaggatttagtagcaaaaaggataagtattagaacaattgcctat 24520098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 26829514 - 26829565
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  ||||| ||||| ||||||||| |||||||||||||||||||    
T  26829514 ttagtaggaaatagcaacaaaatggaggagtaatagaacgattgcctatgat 26829565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 309
Target Start/End: Original strand, 24388441 - 24388471
Alignment:
Q  279 aaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||||||||||||||||||||||    
T  24388441 aaggaggagtattagaacgattgcctatgat 24388471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 21695413 - 21695442
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  21695413 tgatgacatgtcatcttacgttattcttag 21695442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 24389855 - 24389822
Alignment:
Q  230 aatgatgacatgtcatcttacgttattcttagta 263  Q
    |||||||||| |||||||||||||||||||||||    
T  24389855 aatgatgacaggtcatcttacgttattcttagta 24389822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 24518586 - 24518619
Alignment:
Q  230 aatgatgacatgtcatcttacgttattcttagta 263  Q
    |||||||||||||||||| |||||||||||||||    
T  24518586 aatgatgacatgtcatctaacgttattcttagta 24518619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 260
Target Start/End: Original strand, 12342891 - 12342919
Alignment:
Q  232 tgatgacatgtcatcttacgttattctta 260  Q
    |||||||||||||||||||||||||||||    
T  12342891 tgatgacatgtcatcttacgttattctta 12342919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 23387597 - 23387646
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23387597 agtaggttttagcagcaaaaaggaggagtattagaacgattgcctatgat 23387646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 16521951 - 16522002
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  ||||||||||| |||||||||||||||||||||||||||||    
T  16521951 ttagtaggaaatagcagcaaaatggaggagtattagaacgattgcctatgat 16522002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 20860386 - 20860337
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  20860386 agtaggttttagcagcaaaaaggagaagtattagaacaattgcctatgat 20860337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 19006896 - 19006947
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  ||||| ||||| |||||||||||||||||||||||||||||    
T  19006896 ttagtaggaaatagcaacaaaatggaggagtattagaacgattgcctatgat 19006947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 24658348 - 24658399
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||| ||||||||||||||||||||||||||| | ||| |||||||||    
T  24658348 ttagtaggttttagcagcaaaaaggaggagtattagtaagatagcctatgat 24658399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 34132131 - 34132084
Alignment:
Q  262 taggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  34132131 taggttttagcagcaaaaaggagaagtattagaacgactgcctatgat 34132084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 19003806 - 19003864
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| | |||||| ||||||||||||||||| |||||||||||| |||| |||||||    
T  19003806 gttattttcagtaggttttagcagcaaaaaggatgagtattagaacaattgtctatgat 19003864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 28666539 - 28666490
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||||||||||||| |||||||||| || ||||||||||    
T  28666539 agtaggttttagcagcaaaaaggagaagtattagaatgactgcctatgat 28666490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 20548501 - 20548552
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  ||||| ||||| |||||||||||||||||||||||| ||||    
T  20548501 ttagtaggaaatagcaacaaaatggaggagtattagaacgattgcctgtgat 20548552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 24142456 - 24142405
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||| |||||||| |||||| |||||||||||||| |||| ||||||||    
T  24142456 ttagtagaatttagcatcaaaaaagaggagtattagaaagatttcctatgat 24142405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 306
Target Start/End: Complemental strand, 19053136 - 19053102
Alignment:
Q  272 cagcaaaaaggaggagtattagaacgattgcctat 306  Q
    ||||||||||||||||||||||||| |||||||||    
T  19053136 cagcaaaaaggaggagtattagaacaattgcctat 19053102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 32746273 - 32746323
Alignment:
Q  181 tagagtttaatggtggttggttgacaatacaaaacaaccttgcacatacaa 231  Q
    |||||||||||| |||| |||||||| | ||||||||| ||||||||||||    
T  32746273 tagagtttaatgctggtgggttgacagttcaaaacaactttgcacatacaa 32746323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 17831790 - 17831761
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  17831790 tgatgacatgtcatcttacgttattcttag 17831761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 24320572 - 24320617
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgccta 305  Q
    |||||| |||||||||||||||| |||||||||| |||||| ||||    
T  24320572 agtaggttttagcagcaaaaaggcggagtattagcacgatttccta 24320617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 25920878 - 25920829
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||||||| |||||||| ||| |||||||||| | ||||||||||||    
T  25920878 agtaggatttaccagcaaaacggatgagtattagagcaattgcctatgat 25920829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 26315283 - 26315254
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  26315283 tgatgacatgtcatcttacgttattcttag 26315254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 22797483 - 22797519
Alignment:
Q  273 agcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  22797483 agcaaaaaggagaagtattagagcgattgcctatgat 22797519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 29988006 - 29987954
Alignment:
Q  258 ttagtaggatttagcagcaaaaa-ggaggagtattagaacgattgcctatgat 309  Q
    |||||||  |||||||||||||| || ||||||||||||||||||| ||||||    
T  29988006 ttagtagattttagcagcaaaaaaggtggagtattagaacgattgcatatgat 29987954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 17108792 - 17108716
Alignment:
Q  233 gatgacatgtcatcttacgttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||| |||||||||||||||| | |||||| |||| |||||||||||| |||||||||||  ||||||||||||    
T  17108792 gatgacaagtcatcttacgttattttcagtaggttttaacagcaaaaaggatgagtattagaaaaattgcctatgat 17108716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 7583839 - 7583790
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  7583839 agtaggttttagcagcaaaaaggaggagtattagaacaattgcctatgat 7583790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 22171793 - 22171746
Alignment:
Q  262 taggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  22171793 taggttttagcagcaaaaaggaggagtattagaatgattgcctatgat 22171746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 17335412 - 17335454
Alignment:
Q  267 tttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  17335412 tttagaagcaaaaaggaggagtattagaacgattgcctatgat 17335454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 18750880 - 18750822
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| | |||||| |||||||||||||||||||||||||||| | ||||||||||||    
T  18750880 gttattttcagtagggtttagcagcaaaaaggaggagtattagagcaattgcctatgat 18750822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 15166515 - 15166466
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  15166515 agtaggttttagcagcaaaaacgaggagtattagaacgattgcctgtgat 15166466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 11252177 - 11252228
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    ||||||||||||||||  |||||  |||||||||||||||||||||||||||    
T  11252177 ttagtaggatttagcaaaaaaaaaaaggagtattagaacgattgcctatgat 11252228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 307
Target Start/End: Complemental strand, 17218563 - 17218529
Alignment:
Q  273 agcaaaaaggaggagtattagaacgattgcctatg 307  Q
    |||||||||||||||||||||||||||||||||||    
T  17218563 agcaaaaaggaggagtattagaacgattgcctatg 17218529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 17711353 - 17711307
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctat 306  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||||    
T  17711353 agtaggttttagctgcaaaaatgaggagtattagaacgattgcctat 17711307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 9536805 - 9536854
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||||||||||||||||||||| ||| ||| ||||||||    
T  9536805 agtaggttttagcagcaaaaaggaggagtattacaacaattacctatgat 9536854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 12616761 - 12616712
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| ||||||||||||||||| |||||||||||| ||| ||||||||    
T  12616761 agtaggttttagcagcaaaaaggatgagtattagaacaatttcctatgat 12616712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 4617143 - 4617092
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  ||| ||||||||||||||||||||||| |||| ||||||||    
T  4617143 ttagtaggaaatagaagcaaaaaggaggagtattagaaagattacctatgat 4617092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 10106342 - 10106293
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||| ||||||||||||||||||| ||| |||| |||||||    
T  10106342 agtaggttttagctgcaaaaaggaggagtattacaacaattgtctatgat 10106293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 17277942 - 17277913
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  17277942 tgatgacatgtcatcttacgttattcttag 17277913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 8968072 - 8968100
Alignment:
Q  233 gatgacatgtcatcttacgttattcttag 261  Q
    |||||||||||||||||||||||||||||    
T  8968072 gatgacatgtcatcttacgttattcttag 8968100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 20300 - 20351
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  20300 ttagtaggaaatagcagcaaaaaggaggagtattagaacgattgcctatgat 20351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0451 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 5786 - 5728
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||||||||| |||||||||||||||||||||||| |||| |||||||    
T  5786 gttatttttagtaggatttagaagcaaaaaggaggagtattagaacaattgtctatgat 5728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 11804745 - 11804696
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  11804745 agtaggttttagcagcaaaaaggagcagtattagaacgattgcctatgat 11804696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 19201514 - 19201458
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatg 307  Q
    |||||| | ||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  19201514 gttattttcagtaggatttagcagcaaaaaggtggactattagaacgattgcctatg 19201458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 10611758 - 10611711
Alignment:
Q  262 taggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||    
T  10611758 taggttttagcagcaaaaaggatgagtattagaacgattgcctatgat 10611711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 18986801 - 18986843
Alignment:
Q  267 tttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  18986801 tttagcagcaaaaaggaggagtattagaacgactgcctatgat 18986843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 19001429 - 19001471
Alignment:
Q  267 tttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  19001429 tttagcagcaaaaaggaggagtattagaacgactgcctatgat 19001471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 8052478 - 8052527
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||||||||| |||||||||||||| |||||||||||||    
T  8052478 agtaggttttagcagcaaaaatgaggagtattagaatgattgcctatgat 8052527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 8977520 - 8977569
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||||||||||||||||||||||||| | ||||||||||    
T  8977520 agtaggttttagcagcaaaaaggaggagtattagaacaactgcctatgat 8977569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 2927923 - 2927872
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||||| |||||||| |||||||||||||| |||| ||||||||    
T  2927923 ttagtaggatttagtagcaaaaatgaggagtattagaaagattacctatgat 2927872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 9978334 - 9978283
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  ||||||||||| ||||||||||||||||| |||||||||||    
T  9978334 ttagtaggaaatagcagcaaaatggaggagtattagaacggttgcctatgat 9978283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 5236907 - 5236965
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| | |||||| ||||||||||||||||||||| |||||||| ||| ||||||||    
T  5236907 gttattttcagtaggttttagcagcaaaaaggaggaggattagaacaatttcctatgat 5236965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 9078923 - 9078981
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| | |||||| || |||||||||||||||||||||| ||||||||| |||||||    
T  9078923 gttattttcagtaggtttcagcagcaaaaaggaggagtattggaacgattgtctatgat 9078981  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 23173726 - 23173784
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| ||| |||| |||||| ||||||||||||||||||||||| |||| |||||||    
T  23173726 gttatttttaataggttttagctgcaaaaaggaggagtattagaacaattgtctatgat 23173784  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 3585572 - 3585621
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| ||||||||||||| |||||||||||| || |||||||||||||    
T  3585572 agtaggttttagcagcaaaatggaggagtattaaaatgattgcctatgat 3585621  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 4450718 - 4450669
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| ||||||| ||||| |||||||||||||||||||||||| ||||    
T  4450718 agtaggttttagcaacaaaatggaggagtattagaacgattgcctgtgat 4450669  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 13280806 - 13280757
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| ||||||||||||||| | ||||||||||| |||||||||||||    
T  13280806 agtaggttttagcagcaaaaagaacgagtattagaatgattgcctatgat 13280757  T

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Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 39270320 - 39270365
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcc 303  Q
    |||||| | |||||||| ||||||||||||||||||||||||||||    
T  39270320 ttagtaagttttagcagtaaaaaggaggagtattagaacgattgcc 39270365  T

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Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 8317508 - 8317540
Alignment:
Q  277 aaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||||||||||||||||||||||||    
T  8317508 aaaaggaggagtattagaacgattgcctatgat 8317540  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 261
Target Start/End: Complemental strand, 13280858 - 13280827
Alignment:
Q  230 aatgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||||    
T  13280858 aatgatgacatgtcatcttacgttattcttag 13280827  T

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Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 13287758 - 13287809
Alignment:
Q  258 ttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||  || || ||||||||| |||||||||||||||||||||||||    
T  13287758 ttagtaggaaataacatcaaaaaggatgagtattagaacgattgcctatgat 13287809  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 260
Target Start/End: Complemental strand, 7399425 - 7399396
Alignment:
Q  231 atgatgacatgtcatcttacgttattctta 260  Q
    ||||||||||||||||||||||||||||||    
T  7399425 atgatgacatgtcatcttacgttattctta 7399396  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 9078881 - 9078910
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  9078881 tgatgacatgtcatcttacgttattcttag 9078910  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 10332501 - 10332472
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  10332501 tgatgacatgtcatcttacgttattcttag 10332472  T

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Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 20577543 - 20577502
Alignment:
Q  268 ttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||| |||||||  ||||||||||||||||||||||||||||    
T  20577543 ttagtagcaaaattgaggagtattagaacgattgcctatgat 20577502  T

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Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 20577588 - 20577559
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  20577588 tgatgacatgtcatcttacgttattcttag 20577559  T

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Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 23173685 - 23173714
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  23173685 tgatgacatgtcatcttacgttattcttag 23173714  T

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Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 26249125 - 26249166
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattg 301  Q
    |||||| ||||||||||||||||| |||||||||||| ||||    
T  26249125 agtaggttttagcagcaaaaaggatgagtattagaacaattg 26249166  T

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Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 95664 - 95622
Alignment:
Q  267 tttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  95664 tttagcagcaaaaaagaggagtattagaacgattgcctatgat 95622  T

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Target: scaffold0056 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 23075 - 23036
Alignment:
Q  268 ttagcagcaaaaaggaggagtattagaacgattgcctatg 307  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  23075 ttagcaccaaaaaggaggagtattagaacgattgcctatg 23036  T

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Target: scaffold0555 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 6498 - 6451
Alignment:
Q  262 taggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||||||||| |||||| |||||||||||||||||| | |||||||    
T  6498 taggatttagcaacaaaaatgaggagtattagaacgatcgtctatgat 6451  T

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Target: scaffold0032 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 92869 - 92924
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctat 306  Q
    |||||| |||||||| |||||||||||||| ||||| ||||||| | |||||||||    
T  92869 gttatttttagtagggtttagcagcaaaaaagaggaatattagagccattgcctat 92924  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 41395 - 41337
Alignment:
Q  251 gttattcttagtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| |||||||| |||| ||||||||  ||||||||||||| | ||||||||||||    
T  41395 gttatttttagtaggttttaccagcaaaacagaggagtattagatcaattgcctatgat 41337  T

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Target: scaffold0111 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 21487 - 21438
Alignment:
Q  260 agtaggatttagcagcaaaaaggaggagtattagaacgattgcctatgat 309  Q
    |||||| ||||||||||||||||| ||||| |||||| ||||| ||||||    
T  21487 agtaggttttagcagcaaaaaggatgagtagtagaacaattgcttatgat 21438  T

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Target: scaffold0043 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 88436 - 88465
Alignment:
Q  232 tgatgacatgtcatcttacgttattcttag 261  Q
    ||||||||||||||||||||||||||||||    
T  88436 tgatgacatgtcatcttacgttattcttag 88465  T

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