View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_44 (Length: 272)
Name: NF1380_low_44
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_44 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 272
Target Start/End: Original strand, 42678608 - 42678875
Alignment:
| Q |
5 |
ctccacaataaagactccattgacatgctccgccgtcagggtatcgacttctttcgtaacactgttcaaggtgtggactcgtttcattttgcgatgctga |
104 |
Q |
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| T |
42678608 |
ctccacaacaaagactccattgacatgctccaccgtcagggtatcaacttctttcgtaacactgttcaaggtgtggactcgtttcattttgcgatgctga |
42678707 |
T |
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| Q |
105 |
tgcggtggtctggactgcttttcaacaactcggtgacatgggtgacattccacagtgcgtatgattttggatatctggtgaaaatcttaacgcggcatta |
204 |
Q |
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| T |
42678708 |
tgcggtggtctggactgcttttcaacaactcggtgacatgggtgacattccacagtgcgtatgattttggatatctggtgaaaatcttaacgcggcatta |
42678807 |
T |
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| Q |
205 |
tcttcctcgtagcttgaaagagtttttgcatgttttgagagaattatttggaaggaatgtgtatgata |
272 |
Q |
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| T |
42678808 |
tcttcctcgtagcttgaaagagtttttgcatgttttgagagaattatttggaaggaatgtgtatgata |
42678875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 272
Target Start/End: Complemental strand, 54704004 - 54703872
Alignment:
| Q |
140 |
acatgggtgacattccacagtgcgtatgattttggatatctggtgaaaatcttaacgcggcattatcttcctcgtagcttgaaagagtttttgcatgttt |
239 |
Q |
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| T |
54704004 |
acatgggtcacatttcacagtgcatttgattttggatatctggtaaaaatactaacacagagttatctcccgaatagcttggaagactttttgaaatttt |
54703905 |
T |
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| Q |
240 |
tgagagaattatttggaaggaatgtgtatgata |
272 |
Q |
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| T |
54703904 |
tgagagaattatttggaagtaaagtgtatgata |
54703872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 54704130 - 54704090
Alignment:
| Q |
15 |
aagactccattgacatgctccgccgtcagggtatcgacttc |
55 |
Q |
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| T |
54704130 |
aagattccattgacatgctccgccgtcaaggtattgacttc |
54704090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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