View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_47 (Length: 256)
Name: NF1380_low_47
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_47 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 29 - 256
Target Start/End: Original strand, 25923766 - 25923993
Alignment:
| Q |
29 |
acaaatgaccaccttcttcaatcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcaccttttccacc |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25923766 |
acaaatgaccaccttcttcaatcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcaccttttcctcc |
25923865 |
T |
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| Q |
129 |
tccttctatcgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggcttcacaaacagcaacacaggatgcttccca |
228 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25923866 |
tccttctaccgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggcttcacaaacagcaacacaggatgtttccca |
25923965 |
T |
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| Q |
229 |
gccatgcttccagtatttgtaattccca |
256 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
25923966 |
gccatgcttccagtatttgtaattccca |
25923993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 29 - 256
Target Start/End: Original strand, 25904923 - 25905150
Alignment:
| Q |
29 |
acaaatgaccaccttcttcaatcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcaccttttccacc |
128 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25904923 |
acaaataaccaccttcttcaatcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcaccctttccacc |
25905022 |
T |
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| Q |
129 |
tccttctatcgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggcttcacaaacagcaacacaggatgcttccca |
228 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25905023 |
tccttccaccgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggcttcacaaacagcaacacaggatgcttccca |
25905122 |
T |
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| Q |
229 |
gccatgcttccagtatttgtaattccca |
256 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
25905123 |
gccatgcttccagtatttgtaattccca |
25905150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 29 - 256
Target Start/End: Original strand, 25883589 - 25883816
Alignment:
| Q |
29 |
acaaatgaccaccttcttcaatcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcaccttttccacc |
128 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25883589 |
acaaataaccaccttcttcaatcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcaccttttccacc |
25883688 |
T |
|
| Q |
129 |
tccttctatcgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggcttcacaaacagcaacacaggatgcttccca |
228 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
25883689 |
cccttctaccgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggtttcacaaacagcaacacaggatgtttccca |
25883788 |
T |
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| Q |
229 |
gccatgcttccagtatttgtaattccca |
256 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
25883789 |
gccatgcttccagtatttgtaattccca |
25883816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 29 - 256
Target Start/End: Complemental strand, 25961503 - 25961276
Alignment:
| Q |
29 |
acaaatgaccaccttcttcaatcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcaccttttccacc |
128 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25961503 |
acaaataaccaccttcttcaatcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcaccttttccacc |
25961404 |
T |
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| Q |
129 |
tccttctatcgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggcttcacaaacagcaacacaggatgcttccca |
228 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
25961403 |
cccttctaccgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggtttcacaaacagcaacacaggatgtttccca |
25961304 |
T |
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| Q |
229 |
gccatgcttccagtatttgtaattccca |
256 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
25961303 |
gccatgcttccagtatttgtaattccca |
25961276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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