View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_5 (Length: 601)
Name: NF1380_low_5
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 11 - 572
Target Start/End: Original strand, 40453425 - 40453986
Alignment:
| Q |
11 |
cacagatccaaaaagaactccagcaagagatctcactgtcactgctcctagttcaccttctcctttacccatcaaccctaaacatgtccatgaaaaggcc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453425 |
cacagatccaaaaagaactccagcaagagatctcactgtcactgctcctagttcaccttctcctttacccatcaaccctaaacatgtccatgaaaaggcc |
40453524 |
T |
|
| Q |
111 |
aagaaaaacactacttcaaagcttagcgataagaaaaagaaaaatgcaacaaagagtactcatgatcagaagaagaaaagtactactacaacagaaaaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453525 |
aagaaaaacactacttcaaagcttagcgataagaaaaagaaaaatgcaacaaagagtactcatgatcagaagaagaaaagtactactacaacagaaaaag |
40453624 |
T |
|
| Q |
211 |
tgactgaacatattgcaaacaattactcttcaaaaccggttgatagtattttaagaaggagttgggttaagccagcttctgatttaatcactcctcctac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453625 |
tgactgaacatattgcaaacaattactcttcaaaaccggttgatagtattttaagaaggagttgggttaagccagcttctgatttaatcactcctcctac |
40453724 |
T |
|
| Q |
311 |
ttcatcaagatatttgcttggtgacacagtttctttggatggtgtattagattatgaacctgttttgggtttaactaaggttgatgataacaaaaagaat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453725 |
ttcatcaagatatttgcttggtgacacagtttctttggatggtgtattagattatgaacctgttttgggtttaactaaggttgatgataacaaaaagaat |
40453824 |
T |
|
| Q |
411 |
gctcaagtgcttcatgaagatgaagataaacattcatctaaacagtattcaagctcctctgttccaaagactagttctacaaaccaggttagtatctctt |
510 |
Q |
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| T |
40453825 |
gctcaagtgcttcatgaagatgaagataaacattcatctaaacagtattcaagctcctctgttccaaagtctagttctacaaaccaggttagtatctctt |
40453924 |
T |
|
| Q |
511 |
ttctctctgtgtgtaaattatttcacatgtgtataagcaagtttttcattgtatagtataga |
572 |
Q |
| |
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| T |
40453925 |
ttctctctgtgtgtaaattatttcacatgtgtataagcaagtttttcattgtatagtataga |
40453986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 380 - 502
Target Start/End: Original strand, 28229060 - 28229182
Alignment:
| Q |
380 |
tttaactaaggttgatgataacaaaaagaatgctcaagtgcttcatgaagatgaagataaacattcatctaaacagtattcaagctcctctgttccaaag |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||||||||| ||||||||||| |
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| T |
28229060 |
tttaactaaggttgatgataacaaaaagaatgctcaagtgcttcgtgaagatgaagataaacatttatctaaaccttgttcaagctcatctgttccaaaa |
28229159 |
T |
|
| Q |
480 |
actagttctacaaaccaggttag |
502 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
28229160 |
tctagttctacaaaccaggttag |
28229182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 512 - 572
Target Start/End: Original strand, 28229217 - 28229277
Alignment:
| Q |
512 |
tctctctgtgtgtaaattatttcacatgtgtataagcaagtttttcattgtatagtataga |
572 |
Q |
| |
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||||||| | ||| ||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
28229217 |
tctctctctctgtgaattatttcacatgtgtataagcaactttttcattgtatagtctaga |
28229277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 235 - 398
Target Start/End: Original strand, 31252370 - 31252532
Alignment:
| Q |
235 |
actcttcaaaaccggttgatagtattttaagaaggagttgggttaagc-cagcttctgatttaatcactcctcctacttcatcaagatatttgcttggtg |
333 |
Q |
| |
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||||||||||||| |||||||||| ||||| |||||||||| || || ||||||| || |||||||| |||| || | ||||||||||||||||| |
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| T |
31252370 |
actcttcaaaaccaattgatagtatcttaag---gagttgggtttaggtcaccttctgacttcatcactccacctaagtcgttaagatatttgcttggtg |
31252466 |
T |
|
| Q |
334 |
acacagtttctttggatggtgta-ttagattatgaacctgttttgggtttaactaaggttgatgat |
398 |
Q |
| |
|
||| | ||||| |||||||| | ||||| |||| | ||||||||||||||||||| |||||||| |
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| T |
31252467 |
acataaattcttcggatggtgaatttagacaatgaccttgttttgggtttaactaagattgatgat |
31252532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 367
Target Start/End: Original strand, 31286398 - 31286474
Alignment:
| Q |
292 |
atttaatcactcctcctacttcatcaagatatttgcttggtgacacagtttctttggatggtgta-ttagattatga |
367 |
Q |
| |
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||||||||||| ||| | | ||||||| |||||||||||||||| || |||||||||||||| || ||||||||||| |
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| T |
31286398 |
atttaatcacttctcttgcatcatcaaaatatttgcttggtgacgcaatttctttggatggtatacttagattatga |
31286474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 31252246 - 31252282
Alignment:
| Q |
11 |
cacagatccaaaaagaactccagcaagagatctcact |
47 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
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| T |
31252246 |
cacagatccaaaaagaactccctcaagagatctcact |
31252282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 245
Target Start/End: Complemental strand, 20008263 - 20008124
Alignment:
| Q |
103 |
aaaaggccaagaaaaacactacttcaaagcttagcgataagaaaaagaaaaatgcaacaaagagtactcatgatcagaagaagaaaagtactactacaac |
202 |
Q |
| |
|
||||||||||||||| ||||| |||| ||| | |||||||||| ||||| ||||| ||| ||| | || || || |||||||| ||||||| | |
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| T |
20008263 |
aaaaggccaagaaaatcactatttcattgctaaataataagaaaaataaaaaagcaaccaaggctacccgtgtccataaaaagaaaag---tactacatc |
20008167 |
T |
|
| Q |
203 |
agaaaaagtgactgaacatattgcaaacaattactcttcaaaa |
245 |
Q |
| |
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||||||| | ||| |||| |||||||||||||||||||||||| |
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| T |
20008166 |
agaaaaacttactaaacaaattgcaaacaattactcttcaaaa |
20008124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 24973555 - 24973587
Alignment:
| Q |
213 |
actgaacatattgcaaacaattactcttcaaaa |
245 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |
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| T |
24973555 |
actgaacaaattgcaaacaattactcttcaaaa |
24973587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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