View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1380_low_50 (Length: 252)
Name: NF1380_low_50
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_50 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5623636 - 5623689
Alignment:
| Q |
1 |
aactagaatcaaagagagatgaagataaaacagacaggttcaggaatgaaacaaa |
55 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5623636 |
aactagaatcaaa-agagatgaagataaaacagacaggttcaagaatgaaacaaa |
5623689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 5623772 - 5623812
Alignment:
| Q |
106 |
gcggttgcgttttggtttgtttggatggagctgctgagtga |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5623772 |
gcggttgcgttttggtttgtttggatggagctgctgagtga |
5623812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 5623740 - 5623774
Alignment:
| Q |
57 |
cagaaacaagaacctctgttgttatcaattgcgcg |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5623740 |
cagaaacaagaacctctgttgttatcaattgcgcg |
5623774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University