View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_51 (Length: 251)
Name: NF1380_low_51
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2660867 - 2661106
Alignment:
| Q |
1 |
gagatgttgaagtgtagacttaagaacacaattttttgtagtttagtttggtttcttnnnnnnntaaatattaatttctataaaatattccgattgctac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| |
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| T |
2660867 |
gagatgttgaagtgtagacttaagaacacaattttttgtagtttagtttggtttcttaaaaaaatcaatattaatttctataaaatgttccgattgctac |
2660966 |
T |
|
| Q |
101 |
atcggatacatacaatttattgtgttcgtgtatggcataaatacgtcttatcatcaagacatcatgcgattatgtagataaagtctctaaatatgataag |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2660967 |
atcggatacatacaatttgttgtgttcgtgtatggcataaatacgtcttatcatcaagacatcatgcgattatgtagataaagtctctaaatatgataag |
2661066 |
T |
|
| Q |
201 |
ttaaatgtgaaacattatcattgttattaaatatattcat |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2661067 |
ttaaatgtgaaacattatcattgttattaaatatattcat |
2661106 |
T |
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