View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_52 (Length: 251)
Name: NF1380_low_52
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_52 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 37109821 - 37110059
Alignment:
| Q |
12 |
agagatgtttatgttttaattaacggtcattttgataaaaagtccagttcagaacaacaatggagaaataagtgttaagagttctttcaactttgaaaga |
111 |
Q |
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| T |
37109821 |
agagatgtttatgttttaattaacggtcattttgataaaaagtaaagttcagaacaacaatggagaaataagtgtta-gagttctttcaactttgaaaga |
37109919 |
T |
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| Q |
112 |
cattgnnnnnnntggttatgttataattaacagtcactttgtccttgataacgtagatgtccaattgaacttaagaaatgtcagctctcatgccacataa |
211 |
Q |
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| T |
37109920 |
cattgaaaaaaatggttatgttataattaacagtcactttgtccttgataacgtagatgtccaattggacttaagaaatgtcagctctcatgccacataa |
37110019 |
T |
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| Q |
212 |
ttgaccgtaggaaatgactaacaaaatatcatcaattcat |
251 |
Q |
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| T |
37110020 |
ttgaccgtaggaaatgactaacaaaatatcatcaattcat |
37110059 |
T |
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