View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_57 (Length: 250)
Name: NF1380_low_57
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 2364891 - 2365126
Alignment:
| Q |
1 |
cttctggttatcctcatcatcaaccatcttatcatgcaccacatggttatccttcaggtacacttgatcatcctaatttgttatcagtaataaacatatc |
100 |
Q |
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| T |
2364891 |
cttctggttatcctcatcatcaaccatcttatcatgcaccacatggttatccttcaggtacacttgatcatcctaatttgttatcagtaataaacat--- |
2364987 |
T |
|
| Q |
101 |
agcgattcaagtactccttgtacttgcttcggcttcttcctttatttatatattcgatttcca-ttttnnnnnnngtaataaatatattagcatgcatat |
199 |
Q |
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|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
2364988 |
agcgattcgagtactccttgtacttgcttcggcttcttcctttatttatatattcgatttccatttttaaaaaaagtaataaatatattagcatgcatat |
2365087 |
T |
|
| Q |
200 |
aaacaatcttttatgatctacctgatgttggtttatatt |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
2365088 |
aaacaatcttttatgatctacctgatgttggtttatatt |
2365126 |
T |
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