View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_58 (Length: 250)
Name: NF1380_low_58
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 40928854 - 40929103
Alignment:
| Q |
1 |
tataacaactagctttcaattacattatctcaattacagtttgacttggatatacat----------tatgtctaaattgtatttttcttggagtgtgtt |
90 |
Q |
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| T |
40928854 |
tataacaactggatttcaattacattatctcaattacagtttgacttggatatacatgataaatgcttatgtataaattgtatttttcttggagtgtgtt |
40928953 |
T |
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| Q |
91 |
tgtgtacaattgtttatgtctgcaaaattgtcttcaggttgatttttcctttgctatctatagatggacaaagaagagccaccaccannnnnnngccacc |
190 |
Q |
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| T |
40928954 |
tgtgtacaattgtttatgtctgcaaaattgttttcaggttgattttgcctttgctatctatagatggacaaagaagagccaccaccaccaccccgccacc |
40929053 |
T |
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| Q |
191 |
aaagccatatagaagaggacctaaactcacaatccatcattcatcctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40929054 |
aaagccatatagaagaggacctaaactcacaatccatcattcatcctttg |
40929103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 48504911 - 48504662
Alignment:
| Q |
1 |
tataacaactagctttcaattacattatctcaattacagtttgacttggatatacat----------tatgtctaaattgtatttttcttggagtgtgtt |
90 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
48504911 |
tataacaactggatttcaattacattatctcaattacagtttgacttggatatacatgataaatgcttatgtataaattgtatttttcttggagtgtgtt |
48504812 |
T |
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| Q |
91 |
tgtgtacaattgtttatgtctgcaaaattgtcttcaggttgatttttcctttgctatctatagatggacaaagaagagccaccaccannnnnnngccacc |
190 |
Q |
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| T |
48504811 |
tgtgtacaattgtttatgtctgcaaaattgttttcgggttgattttgcctttgctatctatagatggacaaagaagagcctccaccaccaccccgccacc |
48504712 |
T |
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| Q |
191 |
aaagccatatagaagaggacctaaactcacaatccatcattcatcctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48504711 |
aaagccatatagaagaggacctaaactcacaatccatcattcatcctttg |
48504662 |
T |
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