View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1380_low_59 (Length: 250)

Name: NF1380_low_59
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1380_low_59
NF1380_low_59
[»] chr2 (10 HSPs)
chr2 (10-174)||(2584380-2584544)
chr2 (171-250)||(2599953-2600033)
chr2 (171-250)||(2591820-2591899)
chr2 (172-250)||(2603105-2603183)
chr2 (48-142)||(2585998-2586092)
chr2 (16-49)||(2576897-2576930)
chr2 (16-49)||(2588947-2588980)
chr2 (105-144)||(2576288-2576327)
chr2 (48-142)||(2595362-2595456)
chr2 (16-49)||(2596022-2596055)
[»] chr3 (2 HSPs)
chr3 (171-244)||(21642310-21642383)
chr3 (172-250)||(26314428-26314506)
[»] chr6 (1 HSPs)
chr6 (171-250)||(30399717-30399796)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 174
Target Start/End: Original strand, 2584380 - 2584544
Alignment:
Q  10 agatgaagatgaagatcattggagttgaagagccatggacccgtcgatcctccttctggggaacatttgttatcaatttaaagaaacttatggttgctat 109  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2584380 agatgaagatgaagatcattggagttgaagagccatggacacgtcgatcctccttccggggaacatttgttatcaatttaaagaaacttatggttgctat 2584479  T
Q  110 gctattggatcttgcaatggattgttatgtttgctcggattataatgattctccatttgttatca 174  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2584480 gctattggatcttgcaatggattgttatgtttgctctgattataatgattctccatttgttatca 2584544  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 2599953 - 2600033
Alignment:
Q  171 atcatatctt-gattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgattt 250  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2599953 atcatatctttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgattt 2600033  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 2591820 - 2591899
Alignment:
Q  171 atcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgattt 250  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| | |||||||    
T  2591820 atcatatcttgattgttacatgaatgaacaccaaaatattacaactgaagagacacaaaggcatgttgctcatatgattt 2591899  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 2603105 - 2603183
Alignment:
Q  172 tcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgattt 250  Q
    |||||||| ||||| |||||||||||||||||||| | | || || ||||||||||||| |||||||||||||||||||    
T  2603105 tcatatctagattgctacatgaatgaacaccaagagatttcagctcaagaggcacaaagacatgttgctaacatgattt 2603183  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 2585998 - 2586092
Alignment:
Q  48 acccgtcgatcctccttctggggaacatttgttatcaatttaaagaaacttatggttgctatgctattggatcttgcaatggattgttatgtttg 142  Q
    |||||| ||||||||||| ||  ||| |||||||||||| | ||||  |  ||| ||||| |||||||||||| |||||||||||||| ||||||    
T  2585998 acccgttgatcctccttccggataacctttgttatcaatgtcaagatgcggatgattgctttgctattggatcctgcaatggattgttttgtttg 2586092  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 2576897 - 2576930
Alignment:
Q  16 agatgaagatcattggagttgaagagccatggac 49  Q
    ||||||||||||||||||||||||||||||||||    
T  2576897 agatgaagatcattggagttgaagagccatggac 2576930  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 2588947 - 2588980
Alignment:
Q  16 agatgaagatcattggagttgaagagccatggac 49  Q
    ||||||||||||||||||||||||||||||||||    
T  2588947 agatgaagatcattggagttgaagagccatggac 2588980  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 2576288 - 2576327
Alignment:
Q  105 gctatgctattggatcttgcaatggattgttatgtttgct 144  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  2576288 gctatgctattgggtcttgcaatggattgttttgtttgct 2576327  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 2595362 - 2595456
Alignment:
Q  48 acccgtcgatcctccttctggggaacatttgttatcaatttaaagaaacttatggttgctatgctattggatcttgcaatggattgttatgtttg 142  Q
    |||||| ||||||||||| || |||| |||| |||| || | |||| |  ||| || | |||||||||||||||||||||||| |||| ||||||    
T  2595362 acccgttgatcctccttccggagaacctttgctatcgatgtcaagatatgtattgtcgatatgctattggatcttgcaatggaatgttttgtttg 2595456  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 2596022 - 2596055
Alignment:
Q  16 agatgaagatcattggagttgaagagccatggac 49  Q
    |||||||||| |||||||||||||||||||||||    
T  2596022 agatgaagattattggagttgaagagccatggac 2596055  T

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Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 21642383 - 21642310
Alignment:
Q  171 atcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaaca 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21642383 atcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaaca 21642310  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 26314506 - 26314428
Alignment:
Q  172 tcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgattt 250  Q
    |||||||||||||| ||||||| |||||||||||||| | |   |||||| |  ||||| ||||||||| |||||||||    
T  26314506 tcatatcttgattgctacatgagtgaacaccaagatatttccggtgaagacgtgcaaagacatgttgctcacatgattt 26314428  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 30399717 - 30399796
Alignment:
Q  171 atcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgattt 250  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  30399717 atcatatcttgattattacatgaatgaacaccaagatagtacaactgaataggcacaaagggatgtttctaacatgattt 30399796  T

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