View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1380_low_6 (Length: 561)

Name: NF1380_low_6
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1380_low_6
NF1380_low_6
[»] chr4 (13 HSPs)
chr4 (11-537)||(55301317-55301854)
chr4 (83-151)||(36138985-36139053)
chr4 (83-151)||(42096747-42096815)
chr4 (43-142)||(37182221-37182312)
chr4 (83-151)||(7095589-7095657)
chr4 (24-149)||(17399605-17399722)
chr4 (85-141)||(30211957-30212013)
chr4 (24-79)||(50197757-50197812)
chr4 (82-123)||(56369527-56369568)
chr4 (84-128)||(6083717-6083761)
chr4 (31-79)||(33648207-33648255)
chr4 (83-127)||(53979066-53979110)
chr4 (83-127)||(56210954-56210998)
[»] chr8 (3 HSPs)
chr8 (85-151)||(5995150-5995216)
chr8 (83-151)||(157527-157595)
chr8 (82-142)||(43846301-43846361)
[»] chr6 (6 HSPs)
chr6 (26-127)||(2744115-2744207)
chr6 (83-151)||(28992414-28992482)
chr6 (28-79)||(2725856-2725907)
chr6 (82-141)||(3607009-3607068)
chr6 (106-151)||(2904754-2904799)
chr6 (82-142)||(2146780-2146840)
[»] chr5 (4 HSPs)
chr5 (26-151)||(37442556-37442672)
chr5 (82-131)||(32303659-32303708)
chr5 (89-151)||(8254755-8254817)
chr5 (26-127)||(42923933-42924026)
[»] chr1 (6 HSPs)
chr1 (31-151)||(10608912-10609024)
chr1 (84-151)||(14210655-14210722)
chr1 (85-151)||(622890-622956)
chr1 (85-142)||(31847684-31847741)
chr1 (102-151)||(6960025-6960074)
chr1 (28-77)||(32827729-32827778)
[»] chr7 (2 HSPs)
chr7 (82-142)||(41909317-41909377)
chr7 (26-79)||(3756378-3756431)
[»] chr2 (3 HSPs)
chr2 (82-150)||(33833400-33833468)
chr2 (82-128)||(44069892-44069938)
chr2 (82-142)||(32016435-32016496)
[»] chr3 (4 HSPs)
chr3 (106-142)||(55419285-55419321)
chr3 (22-68)||(54441007-54441053)
chr3 (83-128)||(17647752-17647797)
chr3 (22-76)||(27788740-27788796)
[»] scaffold0254 (1 HSPs)
scaffold0254 (82-142)||(23241-23301)


Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 11 - 537
Target Start/End: Original strand, 55301317 - 55301854
Alignment:
Q  11 cacagacacacgattattgctcttcttccatatgtttttgctcgttcccgtcaaaatatccgagtgtgactgcgtgagttaactcacgcatgtacatttt 110  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||    
T  55301317 cacagacacacaattattgctcttctcccatatgtttttgctcgttcccgtcaaaatattcgagtgtgactgcatgagttagctcacgcatgtacatttt 55301416  T
Q  111 caacgtgagttaactcacataagtgtatttttgagcgtgagaataagca-----------cataggagaagagcaattctccggacacactcccatccca 199  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||    
T  55301417 caacgtgagttgactcacataagtgtatttttcagcgtgagaataagcaaaaacagatagcataggagaagagcaattctccggacacactcccatccca 55301516  T
Q  200 tgaggcccaagttgatatatgggcctagtgatataagaggtccaactaaatcaaaaacccttcttcaacctcaaactcaaaactgttagaaactcttaaa 299  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  55301517 tgaggcccaagttgatgtatgggcctagtgatataagaggtccaactaaatcaaaaacccttcttcaacctcaaactcaaaactgttggaaactcttaaa 55301616  T
Q  300 atattgcaagagattattcggcgcagccccttcgacggtggccgtaaccctaaaccgtgaaccatggctgacatagtgcaatacaagctagagcgcatgt 399  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55301617 atattgcaagatattattcggcgcagccccttcgacggtggccgtaaccctaaacggtgaaccatggctgacatagtgcaatacaagctagagcgcatgt 55301716  T
Q  400 tcgacgagttcgaagatctcgagcaacgcggcctattcaacaagcgagaaatcgccgagattgttaaacagaggcggaaattcgagtacaggctgaaaag 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  55301717 tcgacgagttcgaagatctcgagcaacgcggcctattcaacaagcgagaaatcgccgagattgttaaacagaggcgaaaattcgagtacaggctgaaaag 55301816  T
Q  500 gccgtgtccgttgaaggtggattttgtagcgtacatag 537  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  55301817 gccgtgtccgttgaaggcggattttgtagcgtacatag 55301854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 36138985 - 36139053
Alignment:
Q  83 cgtgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtatttttgagcgtgag 151  Q
    ||||||||||||||||||||| |||||||||||||||||||||||  || ||| |||||| ||||||||    
T  36138985 cgtgagttaactcacgcatgtgcattttcaacgtgagttaactcatgtatgtgaatttttcagcgtgag 36139053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 42096747 - 42096815
Alignment:
Q  83 cgtgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtatttttgagcgtgag 151  Q
    |||||||||||||||| |  ||||||||||||||||||||||||||||| ||| |||||| ||||||||    
T  42096747 cgtgagttaactcacgtagatacattttcaacgtgagttaactcacataggtgcatttttcagcgtgag 42096815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 37182312 - 37182221
Alignment:
Q  43 tgtttttgctcgttcccgtcaaaatatccgagtgtgactgcgtgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtattttt 142  Q
    ||||||||||||||||| |||||||| |||||        ||| ||||||||||| ||||| |||||||||||||||||||||||| || ||||||||||    
T  37182312 tgtttttgctcgttcccatcaaaataaccgag--------cgtaagttaactcacacatgtgcattttcaacgtgagttaactcacgtaggtgtattttt 37182221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 7095657 - 7095589
Alignment:
Q  83 cgtgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtatttttgagcgtgag 151  Q
    |||||||||||||||||| ||  |||||||| || ||||||||||||||||||||||||| || |||||    
T  7095657 cgtgagttaactcacgcaagtgtattttcaatgtaagttaactcacataagtgtatttttcagtgtgag 7095589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 17399605 - 17399722
Alignment:
Q  24 ttattgctcttcttccatatgtttttgctcgttcccgtcaaaatatccgagtgtgactgcgtgagttaactcacgcatgtacattttcaacgtgagttaa 123  Q
    ||||||||||||| || ||||||||| |||||||| ||||||||| || ||        |||||||||||| ||||| || |||||| || |||||||||    
T  17399605 ttattgctcttctgccgtatgtttttactcgttcctgtcaaaatagcctag--------cgtgagttaactaacgcaagtgcatttttaatgtgagttaa 17399696  T
Q  124 ctcacataagtgtatttttgagcgtg 149  Q
    ||| ||||||||  ||||| ||||||    
T  17399697 ctctcataagtgattttttcagcgtg 17399722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 30211957 - 30212013
Alignment:
Q  85 tgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtatttt 141  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| || ||| |||||    
T  30211957 tgagttaactcacacatgtgcattttcaacgtgagttaactcacgtaggtgcatttt 30212013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 50197757 - 50197812
Alignment:
Q  24 ttattgctcttcttccatatgtttttgctcgttcccgtcaaaatatccgagtgtga 79  Q
    ||||||||||||| ||||  ||||||||||||  ||||||||||| ||||||||||    
T  50197757 ttattgctcttctcccatccgtttttgctcgtcaccgtcaaaatagccgagtgtga 50197812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 56369568 - 56369527
Alignment:
Q  82 gcgtgagttaactcacgcatgtacattttcaacgtgagttaa 123  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||    
T  56369568 gcgtgagttaactcacgcatgtatattttcagcgtgatttaa 56369527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 6083717 - 6083761
Alignment:
Q  84 gtgagttaactcacgcatgtacattttcaacgtgagttaactcac 128  Q
    ||||||||||||||||| || |||||||  |||||||||||||||    
T  6083717 gtgagttaactcacgcaggtgcattttcggcgtgagttaactcac 6083761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 33648207 - 33648255
Alignment:
Q  31 tcttcttccatatgtttttgctcgttcccgtcaaaatatccgagtgtga 79  Q
    |||||| |||||| ||||||||| ||||||||||||||  |||||||||    
T  33648207 tcttctcccatatatttttgctcattcccgtcaaaatagtcgagtgtga 33648255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 53979066 - 53979110
Alignment:
Q  83 cgtgagttaactcacgcatgtacattttcaacgtgagttaactca 127  Q
    ||||||||||||||| |||||  ||||||| ||||||||||||||    
T  53979066 cgtgagttaactcacacatgtgtattttcagcgtgagttaactca 53979110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 56210998 - 56210954
Alignment:
Q  83 cgtgagttaactcacgcatgtacattttcaacgtgagttaactca 127  Q
    ||||||||||||||| | |||  ||||||||||||||||||||||    
T  56210998 cgtgagttaactcacacgtgtgtattttcaacgtgagttaactca 56210954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 5995150 - 5995216
Alignment:
Q  85 tgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtatttttgagcgtgag 151  Q
    |||||||||||||||||||  |||||| |||||||||||||| |||| |||||||||| ||||||||    
T  5995150 tgagttaactcacgcatgtgtattttcgacgtgagttaactcgcatatgtgtatttttcagcgtgag 5995216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 157595 - 157527
Alignment:
Q  83 cgtgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtatttttgagcgtgag 151  Q
    ||||| ||||||||||||||| |||||||||  |||||||| |||| || |||||||||| ||||||||    
T  157595 cgtgaattaactcacgcatgtgcattttcaatatgagttaattcacgtaggtgtatttttcagcgtgag 157527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 43846301 - 43846361
Alignment:
Q  82 gcgtgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtattttt 142  Q
    ||||||||||||||||||||||| ||| ||| |  ||||||||||||  | ||||||||||    
T  43846301 gcgtgagttaactcacgcatgtatattctcagcaagagttaactcacgcaggtgtattttt 43846361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 2744115 - 2744207
Alignment:
Q  26 attgctcttcttccatatgtttttgctcgttcccgtcaaaatatccgagtgtgactgcgtgagttaactcacgcatgtacattttcaacgtgagttaact 125  Q
    ||||||||||| |||| |||||||||||||||||||||||||| | ||         ||||||||||||||||||||| |||||| ||||||||||||||    
T  2744115 attgctcttct-ccatctgtttttgctcgttcccgtcaaaataacagaa--------cgtgagttaactcacgcatgtgcatttttaacgtgagttaact 2744205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 28992482 - 28992414
Alignment:
Q  83 cgtgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtatttttgagcgtgag 151  Q
    ||||| ||||||||| |||||  ||||||| ||||||||||||||| || |||||||||| ||||||||    
T  28992482 cgtgatttaactcacacatgtgtattttcagcgtgagttaactcacgtatgtgtatttttcagcgtgag 28992414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 2725907 - 2725856
Alignment:
Q  28 tgctcttcttccatatgtttttgctcgttcccgtcaaaatatccgagtgtga 79  Q
    ||||||||| |||| ||||||||||| |||||||||||||| ||||| ||||    
T  2725907 tgctcttctcccatctgtttttgctcattcccgtcaaaatagccgagcgtga 2725856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 3607068 - 3607009
Alignment:
Q  82 gcgtgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtatttt 141  Q
    |||||| || ||||||||||||  ||||| ||||||||||||||||| || |||||||||    
T  3607068 gcgtgaattgactcacgcatgtgtatttttaacgtgagttaactcacgtaggtgtatttt 3607009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 2904754 - 2904799
Alignment:
Q  106 attttcaacgtgagttaactcacataagtgtatttttgagcgtgag 151  Q
    ||||||||||||||||||||||| || ||||||||||  |||||||    
T  2904754 attttcaacgtgagttaactcacgtaggtgtatttttctgcgtgag 2904799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 2146780 - 2146840
Alignment:
Q  82 gcgtgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtattttt 142  Q
    |||||||| |||||||||||||  | |||||||||||||||||| || || |||| |||||    
T  2146780 gcgtgagtgaactcacgcatgtgtaatttcaacgtgagttaacttacgtaggtgtgttttt 2146840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 37442672 - 37442556
Alignment:
Q  26 attgctcttcttccatatgtttttgctcgttcccgtcaaaatatccgagtgtgactgcgtgagttaactcacgcatgtacattttcaacgtgagttaact 125  Q
    |||||||||||||||| ||||||||||| ||||||||||| || |||||        |||||||||||||| |||  |  ||||||||| ||||||||||    
T  37442672 attgctcttcttccatctgtttttgctcattcccgtcaaa-tagccgag--------cgtgagttaactcatgcagatgtattttcaacatgagttaact 37442582  T
Q  126 cacataagtgtatttttgagcgtgag 151  Q
    ||| || |||||||||| ||||||||    
T  37442581 cacgtaggtgtatttttcagcgtgag 37442556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 32303659 - 32303708
Alignment:
Q  82 gcgtgagttaactcacgcatgtacattttcaacgtgagttaactcacata 131  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  32303659 gcgtgagttaactcacgcatgtgtattttcagcgtgagttaactcacata 32303708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 8254755 - 8254817
Alignment:
Q  89 ttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtatttttgagcgtgag 151  Q
    ||||||||||||||| ||||||||  |||||||||||||||||  || |||||| ||||||||    
T  8254755 ttaactcacgcatgtgcattttcagtgtgagttaactcacatatatgcatttttcagcgtgag 8254817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 42924026 - 42923933
Alignment:
Q  26 attgctcttcttccatatgtttttgctcgttcccgtcaaaatatccgagtgtgactgcgtgagttaactcacgcatgtacattttcaacgtgagttaact 125  Q
    |||||||||||  ||||||||||| ||||||||| |||||||| ||||         |||| ||||||||| ||| || |||||||||||||||||||||    
T  42924026 attgctcttctcacatatgtttttactcgttcccttcaaaataaccgaa--------cgtgtgttaactcatgcaggtgcattttcaacgtgagttaact 42923935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 10609024 - 10608912
Alignment:
Q  31 tcttcttccatatgtttttgctcgttcccgtcaaaatatccgagtgtgactgcgtgagttaactcacgcatgtacattttcaacgtgagttaactcacat 130  Q
    |||||| | ||||||||||| ||||||||||||||||| | |||        ||||||||||||||||||| | |||||| ||||||| |||||| ||||    
T  10609024 tcttctcctatatgtttttgttcgttcccgtcaaaataacagag--------cgtgagttaactcacgcatatgcatttttaacgtgaattaactgacat 10608933  T
Q  131 aagtgtatttttgagcgtgag 151  Q
    | |||||||||| ||| ||||    
T  10608932 atgtgtattttttagcatgag 10608912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 14210655 - 14210722
Alignment:
Q  84 gtgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtatttttgagcgtgag 151  Q
    ||||||||||  |||||  | ||||||||||||||||||||||||||| |||||||||| ||||||||    
T  14210655 gtgagttaacaaacgcagatgcattttcaacgtgagttaactcacataggtgtatttttcagcgtgag 14210722  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 622956 - 622890
Alignment:
Q  85 tgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtatttttgagcgtgag 151  Q
    ||||||||||| |||||||  ||||||| ||||||||||||||| || |||||||||| | ||||||    
T  622956 tgagttaactcgcgcatgtgtattttcagcgtgagttaactcacgtaggtgtatttttcaacgtgag 622890  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 31847741 - 31847684
Alignment:
Q  85 tgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtattttt 142  Q
    |||||||||||||||| || |||||| | ||||||||||||||||||  |||||||||    
T  31847741 tgagttaactcacgcaagtgcatttttaccgtgagttaactcacatagatgtattttt 31847684  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 6960074 - 6960025
Alignment:
Q  102 gtacattttcaacgtgagttaactcacataagtgtatttttgagcgtgag 151  Q
    |||||||||||||||||||||||| || || |||||||||| || |||||    
T  6960074 gtacattttcaacgtgagttaacttacgtaggtgtatttttcagtgtgag 6960025  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 32827729 - 32827778
Alignment:
Q  28 tgctcttcttccatatgtttttgctcgttcccgtcaaaatatccgagtgt 77  Q
    ||||||||| |||| ||||||||||| |||| ||||||||| ||||||||    
T  32827729 tgctcttctcccatctgtttttgctcattcctgtcaaaatagccgagtgt 32827778  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 41909377 - 41909317
Alignment:
Q  82 gcgtgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtattttt 142  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||  |||| |||||||    
T  41909377 gcgtaagttaactcacgcatgtatattttcaacgtaagttaactcacgcaagtatattttt 41909317  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 3756378 - 3756431
Alignment:
Q  26 attgctcttcttccatatgtttttgctcgttcccgtcaaaatatccgagtgtga 79  Q
    ||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||    
T  3756378 attgctcttctcccatttgtttttgctcattcccgtcaaaatagtcgagtgtga 3756431  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 33833468 - 33833400
Alignment:
Q  82 gcgtgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtatttttgagcgtga 150  Q
    ||||| ||||||||| ||| ||  ||||| |||||||||||||||||||| |||||||||| |||||||    
T  33833468 gcgtgggttaactcatgcaggtgtatttttaacgtgagttaactcacatatgtgtattttttagcgtga 33833400  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 44069892 - 44069938
Alignment:
Q  82 gcgtgagttaactcacgcatgtacattttcaacgtgagttaactcac 128  Q
    ||||||||||||||||||| ||  |||||||||||||||||||||||    
T  44069892 gcgtgagttaactcacgcaggtgtattttcaacgtgagttaactcac 44069938  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 32016496 - 32016435
Alignment:
Q  82 gcgtgagttaa-ctcacgcatgtacattttcaacgtgagttaactcacataagtgtattttt 142  Q
    ||||||||||| |||||||| ||  ||||| ||||||||||||||||| || ||||||||||    
T  32016496 gcgtgagttaaactcacgcaggtgtatttttaacgtgagttaactcacgtaggtgtattttt 32016435  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 55419285 - 55419321
Alignment:
Q  106 attttcaacgtgagttaactcacataagtgtattttt 142  Q
    |||||||||||||||||||||||||||||| ||||||    
T  55419285 attttcaacgtgagttaactcacataagtgcattttt 55419321  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 54441007 - 54441053
Alignment:
Q  22 gattattgctcttcttccatatgtttttgctcgttcccgtcaaaata 68  Q
    ||||||| |||||||||||| |||||||||| ||| |||||||||||    
T  54441007 gattattactcttcttccatctgtttttgcttgtttccgtcaaaata 54441053  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 17647752 - 17647797
Alignment:
Q  83 cgtgagttaactcacgcatgtacattttcaacgtgagttaactcac 128  Q
    |||||||||||||||| | || |||||||||||||| |||||||||    
T  17647752 cgtgagttaactcacgtaggtgcattttcaacgtgatttaactcac 17647797  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 27788740 - 27788796
Alignment:
Q  22 gattattgctcttcttccatatgtttttgctc--gttcccgtcaaaatatccgagtg 76  Q
    ||||||||||||||| ||||||||  ||||||  ||||||||||||||| |||||||    
T  27788740 gattattgctcttctcccatatgtgattgctctcgttcccgtcaaaatagccgagtg 27788796  T

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Target: scaffold0254 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 23241 - 23301
Alignment:
Q  82 gcgtgagttaactcacgcatgtacattttcaacgtgagttaactcacataagtgtattttt 142  Q
    |||||||| |||||||||||||  | |||||||||||||||||| || || |||| |||||    
T  23241 gcgtgagtgaactcacgcatgtgtaatttcaacgtgagttaacttacgtaggtgtgttttt 23301  T

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