View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_low_9 (Length: 497)
Name: NF1380_low_9
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 30 - 487
Target Start/End: Complemental strand, 43980790 - 43980336
Alignment:
| Q |
30 |
gtttccattcatgggttgatctcgggtgattctgatcgatttgatctttactaaaaaccctttaaccacttgagttgaacaaattgaaattatgtgtgta |
129 |
Q |
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| T |
43980790 |
gtttccattcatgggttgatcttgggtgattctgatcgatttgatctttactaaaaaccctttaaccacttgagttgaacaaattgaaattatgtgtgta |
43980691 |
T |
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| Q |
130 |
ttgttacaattttaacatgttctggtattgttgttattgaaacagaatcgtaaggctgcttgtggtagacacagagaagagattttaaatcagcttcgtg |
229 |
Q |
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| T |
43980690 |
ttgctgcaattttaacatgttctggtattgttgttattgaaacagaatcgtaaggctgcttgtggtagacacagagaagagattttaaatcagcttcgtg |
43980591 |
T |
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| Q |
230 |
agatgacaaagtctgagccctatgatcctgaagagtatataccaccggcaaatttatctacaagttttgattgtgatgtaaaggctgatattgttccttc |
329 |
Q |
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| T |
43980590 |
agatgacaaagtctgagccctatgatcctgaagagtatataccaccggcaaatttatctacaagttttgattgtgatgtaaaggctgatattgttccttc |
43980491 |
T |
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| Q |
330 |
aaatgaggtaaagcttctattcatttgttgtttttgtactgtgttgtcaatcctcattcctgataatggatttcttgttttaagaccattttcaaccttg |
429 |
Q |
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| T |
43980490 |
aaatgaggtaaagcttctattcatt---tgtttttgtactgtgttgtcaatcctcattcctgataatggatttcttgttttaagaccattttcaaccttg |
43980394 |
T |
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| Q |
430 |
taatgtttatttgtgtgtatgtataagtcacagatgatgccttgtttttgcatctctg |
487 |
Q |
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| T |
43980393 |
taatgtttatttgtgtgtatgtataagtcacagatgatgccttgtttttgcatctctg |
43980336 |
T |
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