View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13810_high_3 (Length: 554)
Name: NF13810_high_3
Description: NF13810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13810_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Complemental strand, 47152274 - 47151721
Alignment:
| Q |
1 |
taggagtgcttgtggggcttaagcttgtgacaagttttctacagtcaatttcaaatttaactaggtcacatttgacattttttagggtactcgtgtatga |
100 |
Q |
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| T |
47152274 |
taggagtgcttgtggggcttaagcttgtgacaagttttctacagtcaatttcaaatttgactaggtcacatttgacattttttagggtactcgtgtatga |
47152175 |
T |
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| Q |
101 |
tagccaaaaggagccggaagtaaattgtttactatggaactctgtgattcaggactatcatactaagttgctggtagaataaataagaataccttttcat |
200 |
Q |
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| T |
47152174 |
tagccaaaaggagccggaagtaaattgtttactatggaactctgtgattcaggactatcatactaagttgctggtagaataaataagaataccttttcat |
47152075 |
T |
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| Q |
201 |
gaggaccttcaaccgtaatcagcattatgccaagggcccctaccacaacactgagaagcataagcaatccacctttggccaacaaatatgttgctgtttt |
300 |
Q |
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| T |
47152074 |
gaggaccttcaaccgtaatcagcattatgccaagggcccctaccacaacactgagaagcataagcaatccacctttggccaacaaatatgttgctgtttt |
47151975 |
T |
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| Q |
301 |
cttcaagtattgaataatagctaatgtgaagaattttagtgttttgaagggttgtgtggttagtgtcaaattgtctagctccaattggtgcttttcaata |
400 |
Q |
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| T |
47151974 |
cttcaagtattgaataatagctaatgtgaagaattttagtgttttgaagggttgtgtggttagtgtcaaattgtctagctccaattggtgcttttcaata |
47151875 |
T |
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| Q |
401 |
agccctgcaaaacagaaaacttctaatcagcatatatgggatgcaataaaagcttagtgtaagtttttccaattattagttaaaagagcacacaggtctc |
500 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||| |
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| T |
47151874 |
agccctgcaaaacagagaacttctaatcagcatatatgggatgcaataaaagcttaatgtaagtttttccaatcattagtcaaaagggcacacaggtctc |
47151775 |
T |
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| Q |
501 |
ttttcccctttttcaaaggtgaaaggctttaagagcctcgcttttatttaaaac |
554 |
Q |
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| T |
47151774 |
ttttcccctttttcaaaggtgaaaggctttaagagcctcgcttttatttaaaac |
47151721 |
T |
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