View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13810_high_4 (Length: 497)
Name: NF13810_high_4
Description: NF13810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13810_high_4 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 25959747 - 25960224
Alignment:
| Q |
1 |
attacttcacaagtcattccaaatcagcagtgttacnnnnnnn-gtaccaatatctcaaatcgaccgtgccctacacaatctattctccattagaataag |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25959747 |
attacttcacaagtcattccaaatcagcagtgttacaaaaaaaagtaccaatatctcaaatcgaccgtgccctacacaatctattctccattagaataag |
25959846 |
T |
|
| Q |
100 |
gctaggattatttgatggaaatccaaccaaactgaaatatggtaaaattggtccaaatagagtatgttcaaaacaaaacctaaacatagctctagaagct |
199 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25959847 |
gctaggattatttgatggacatccaaccaaactgaaatatggtaaaattggtccaaatagagtatgttcaaaacaaaacctaaacatagctctagaagct |
25959946 |
T |
|
| Q |
200 |
gcaagaagcggcattgtacttttaaaaaacgctgcctcaattctcccacttccaaaatcgacagattccattgtagttataggcccgaatgccaattctt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25959947 |
gcaagaagcggcattgtacttttaaaaaacgctgcctcaattctcccacttccaaaatcgacagattccattgtagttataggcccgaatgccaattctt |
25960046 |
T |
|
| Q |
300 |
catcacaagttgttctaggaaattattttggccgtccttgtaatttggtaacaatattacaaggctttgagaactattctgataacttgttgtatcatcc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25960047 |
catcacaagttgttctaggaaattattttggccgtccttgtaatttggtaacaatattacaaggctttgagaactattctgataacttgttgtatcatcc |
25960146 |
T |
|
| Q |
400 |
tggatgtagcgatggaacaaagtgtgtttcagctgaaattgaccgagcagttgaagttgctaaagtagttgattatgt |
477 |
Q |
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| T |
25960147 |
tggatgtagcgatggaacaaagtgtgtttcagctgaaattgacagagctgttgaagttgctaaagtagttgattatgt |
25960224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 44 - 477
Target Start/End: Complemental strand, 25925768 - 25925338
Alignment:
| Q |
44 |
gtaccaatatctcaaatcgaccgtgccctacacaatctattctccattagaataaggctaggattatttgatggaaatccaaccaaactgaaatatggta |
143 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| || ||||||||||||| ||||| || |||||||| |||||||| ||||| ||||||| | |
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| T |
25925768 |
gtacctatatctcaaatcgaccgtgccctacacaatctgtttaccattagaataagactaggcttgtttgatgggaatccaacaaaactccaatatggca |
25925669 |
T |
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| Q |
144 |
aaattggtccaaatagagtatgttcaaaacaaaacctaaacatagctctagaagctgcaagaagcggcattgtacttttaaaaaacgctgcctcaattct |
243 |
Q |
| |
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||||||||||||| |||||| || ||| |||||||| || | ||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
25925668 |
gaattggtccaaatcaagtatgctctaaagaaaacctagaccttgctcttgaagctgcaagaagtggcattgtacttttaaaaaacactgcctcaattct |
25925569 |
T |
|
| Q |
244 |
cccacttccaaaatcgacagattccattgtagttataggcccgaatgccaattcttcatcacaagttgttctaggaaattattttggccgtccttgtaat |
343 |
Q |
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||||||||||| | | || || | | |||||||||||| ||||||||| ||||| | |||||| ||||||| || |||||||||||||||| |
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| T |
25925568 |
cccacttccaaga---gtaaataccctcggagttataggccctaatgccaataaatcatctaaggttgttttaggaaactactttggccgtccttgtaga |
25925472 |
T |
|
| Q |
344 |
ttggtaacaatattacaaggctttgagaactattct-gataacttgttgtatcatcctggatgtagcgatggaacaaagtgtgtttcagctgaaattgac |
442 |
Q |
| |
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|| ||| |||||||| |||||||| | | ||| || | || | |||| | |||||||| |||||||||||||||| |||||||||||||||| |
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| T |
25925471 |
ttagtaccaatattaaaaggcttttacacttatgctagccaaacacat-tatcgttctggatgtcttgatggaacaaagtgtgcttcagctgaaattgac |
25925373 |
T |
|
| Q |
443 |
cgagcagttgaagttgctaaagtagttgattatgt |
477 |
Q |
| |
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||||||||||||||||||||| || ||||||||| |
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| T |
25925372 |
cgagcagttgaagttgctaaaataagtgattatgt |
25925338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 25885639 - 25885435
Alignment:
| Q |
50 |
atatctcaaatcgaccgtgccctacacaatctattctccattagaataaggctaggattatttgatggaaatccaaccaaactgaaatatggtaaaattg |
149 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| || |||||||| |||||||||||||| ||||||| | ||||| |
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| T |
25885639 |
atatctcaaatcgaccgtgccctacacaatctattcaccattagaataagactaggcttgtttgatgggaatccaaccaaactccaatatggcagaattg |
25885540 |
T |
|
| Q |
150 |
gtccaaatagagtatgttcaaaacaaaacctaaacatagctctagaagctgcaagaagcggcattgtacttttaaaaaacgctgcctcaattctcccact |
249 |
Q |
| |
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|||||||| |||||| || ||| |||||||| || | ||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25885539 |
gtccaaatcaagtatgctctaaagaaaacctagaccttgctcttgaagctgcaagaagtggcattgtacttttaaaaaacactgcctcaattctcccact |
25885440 |
T |
|
| Q |
250 |
tccaa |
254 |
Q |
| |
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||||| |
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| T |
25885439 |
tccaa |
25885435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 50 - 477
Target Start/End: Complemental strand, 25907267 - 25906843
Alignment:
| Q |
50 |
atatctcaaatcgaccgtgccctacacaatctattctccattagaataaggctaggattatttgatggaaatccaaccaaactgaaatatggtaaaattg |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||| ||||| || |||||||| |||||||| ||||| ||||||| | ||||| |
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| T |
25907267 |
atatctcaaatcgaccgtgccctacacaatctgtttaccattagaataagactaggcttgtttgatgggaatccaacaaaactccaatatggcagaattg |
25907168 |
T |
|
| Q |
150 |
gtccaaatagagtatgttcaaaacaaaacctaaacatagctctagaagctgcaagaagcggcattgtacttttaaaaaacgctgcctcaattctcccact |
249 |
Q |
| |
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|||||||| |||||| || ||| |||||||| || | |||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| |
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| T |
25907167 |
gtccaaatcaagtatgctctaaagaaaacctagaccttgctctagaagctgcaagaagtggcattgtacttttgaaaaacactgcctcaattctcccact |
25907068 |
T |
|
| Q |
250 |
tccaaaatcgacagattccattgtagttataggcccgaatgccaattcttcatcacaagttgttctaggaaattattttggccgtccttgtaatttggta |
349 |
Q |
| |
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||||| | || || || ||| |||||||||||| ||||||||| |||||| |||| || ||||||| ||| |||| | ||||||||| ||| |
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|
| T |
25907067 |
tccaagagtga---atacccttggagttataggccctaatgccaataaatcatcaatagttcttttaggaaactatattggtcctccttgtaaaaatgta |
25906971 |
T |
|
| Q |
350 |
acaatattacaaggctttgagaactattctgataacttgttgtatcatcctggatgtagcgatggaacaaagtgtgtttcagctgaaattgaccgagcag |
449 |
Q |
| |
|
|||| ||| |||||||| | | ||| | | |||||| ||||||||| |||||||||||||||| |||||| |||||||||||||||| |
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| T |
25906970 |
tcaatcttaaaaggcttttacacttatgcaagccagacacattatcattctggatgtactgatggaacaaagtgtgcttcagccgaaattgaccgagcag |
25906871 |
T |
|
| Q |
450 |
ttgaagttgctaaagtagttgattatgt |
477 |
Q |
| |
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|||||||||||||| || ||||||||| |
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| T |
25906870 |
ttgaagttgctaaaataagtgattatgt |
25906843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 477
Target Start/End: Complemental strand, 25885293 - 25885215
Alignment:
| Q |
399 |
ctggatgtagcgatggaacaaagtgtgtttcagctgaaattgaccgagcagttgaagttgctaaagtagttgattatgt |
477 |
Q |
| |
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||||||||| |||||| |||||||| |||||| |||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
25885293 |
ctggatgtactgatggagtaaagtgtgcttcagccgaaattgaccgagcagttgaagttgctaaaataagtgattatgt |
25885215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 33421735 - 33421665
Alignment:
| Q |
186 |
tagctctagaagctgcaagaagcggcattgtacttttaaaaaacgctgcctcaattctcccacttccaaaa |
256 |
Q |
| |
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||||||| ||||||||||||| ||||||||| |||||||| ||| |||| ||| |||| |||||||||||| |
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|
| T |
33421735 |
tagctcttgaagctgcaagaaacggcattgtccttttaaagaacactgcttcacttcttccacttccaaaa |
33421665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 33421859 - 33421797
Alignment:
| Q |
62 |
gaccgtgccctacacaatctattctccattagaataaggctaggattatttgatggaaatcca |
124 |
Q |
| |
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||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||| |
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|
| T |
33421859 |
gaccgtgcccttcacaatctattttcaattagaataaggctaggccaatttgatggaaatcca |
33421797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 9153 - 9113
Alignment:
| Q |
424 |
tgtttcagctgaaattgaccgagcagttgaagttgctaaag |
464 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |||||| |
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| T |
9153 |
tgtttcagctgaaattgacgaagcagttgaagtttctaaag |
9113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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