View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13810_high_8 (Length: 343)

Name: NF13810_high_8
Description: NF13810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13810_high_8
NF13810_high_8
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-336)||(353107-353440)
[»] chr8 (1 HSPs)
chr8 (5-336)||(27351605-27351938)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-333)||(183314-183647)
[»] chr2 (2 HSPs)
chr2 (4-336)||(29224847-29225185)
chr2 (4-336)||(29338146-29338484)
[»] chr7 (3 HSPs)
chr7 (108-332)||(1952753-1952974)
chr7 (104-338)||(1949440-1949671)
chr7 (1-72)||(12185091-12185161)


Alignment Details
Target: scaffold0002 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 353107 - 353440
Alignment:
Q  1 aaaatgtcaaagcaaaacaataagcatcaataaaaaactcaaaactgcggatcactggttcgccgcatcatcactcatgtcatccactccatgaacacta 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| || |||  |||||||||||||||||   |||||||||||||||||||||||||    
T  353107 aaaatgtcaaagcaaaacaataagcatcaataaaaa-ctcaaaactacg-atccatggttcgccgcatcatcctccatgtcatccactccatgaacacta 353204  T
Q  101 gcggtcctatcatcatattccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctatccccaggccacatgcaagactccatgaatgactcag 200  Q
    || ||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||  | |||||||||||    
T  353205 gcagtcctatcatcatcttccgctgcaccatagtgttcaccccctccatagaaagtaggcctgtccccaggccacatgcaagactaaacgaatgactcag 353304  T
Q  201 gtgtgagcatctggtaggcagggtctaggcgggcatcatagagagactgatagatgcctcggtggctcctgaaaagcgcaacattctagtccattaaaaa 300  Q
    |||||| ||||||||| || |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  353305 gtgtgaacatctggtatgcggggtataggcgagcataatagagagactgatagatgcctcggtggctcctgaaaagcgcagcattctggtccattaaaaa 353404  T
Q  301 atgatctcgttgctcctgtctctgatatctctgctc 336  Q
    ||||||||| ||||||||||||||||||||||||||    
T  353405 atgatctcgctgctcctgtctctgatatctctgctc 353440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 336
Target Start/End: Complemental strand, 27351938 - 27351605
Alignment:
Q  5 tgtcaaagcaaaacaataagcatcaataaaaaa---ctcaaaactgcggatcactggttcgccgcatcatcactcatgtcatccactccatgaacactag 101  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||| || ||||||||||||||||||   ||||||||||||||| ||||||||||    
T  27351938 tgtcaaagcaaaacaataagcatcaataaaaaaaaactcaaaactgcgg-tccctggttcgccgcatcatcctccatgtcatccactccgtgaacactag 27351840  T
Q  102 cggtcctatcatcatattccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctatccccaggccacatgcaagactccatgaatgactcagg 201  Q
    | ||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  27351839 cagtcctctcatcatcttccgctgcaccatagtgttcaccccctccatagaaagtaggcatgtccccaggccacatgcaagactccacgaatgactcagg 27351740  T
Q  202 tgtgagcatctggtaggcagggtctaggcgggcatcatagagagactgatagatgcctcggtggctcctgaaaagcgcaacattctagtccattaaaaaa 301  Q
    | ||||||||||||| || |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  27351739 tctgagcatctggtatgcggggttttggcgagcatcatagagagactgatagatgcctcggtggctcctgaaaagcgcagcattctggtccattaaaaaa 27351640  T
Q  302 tgatctcgttgctcctgtctctgatatctctgctc 336  Q
    |||||| | ||||| ||||||||||||||||||||    
T  27351639 tgatcttgctgctcttgtctctgatatctctgctc 27351605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 183647 - 183314
Alignment:
Q  1 aaaatgtcaaagcaaaacaataagcatcaataaaaaa--ctcaaaactgcggatcactggttcgccgcatcatcactcatgtcatccactccatgaacac 98  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||||||||  || ||||||||||||||||||   |||||||||||||||||||||||    
T  183647 aaaatgtcaaagaaaaacaataagcatcaataaaaaatactcaaaactgcgc-tccctggttcgccgcatcatcctccatgtcatccactccatgaacac 183549  T
Q  99 tagcggtcctatcatcatattccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctatccccaggccacatgcaagactccatgaatgactc 198  Q
    |||| ||||| ||||||| ||||||||| ||| |||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||    
T  183548 tagcagtcctctcatcatcttccgctgcgccatagtgttcaccccctccatagaaagtaggcctgtccccaggccacatgtaagactccacgaatgactc 183449  T
Q  199 aggtgtgagcatctggtaggcagggtctaggcgggcatcatagagagactgatagatgcctcggtggctcctgaaaagcgcaacattctagtccattaaa 298  Q
    |||||||||||||||||| || |||| | |||| ||||||||||||||||||||||| ||||| ||||| |||||||||||| |||||| ||||||||||    
T  183448 aggtgtgagcatctggtatgcggggttttggcgagcatcatagagagactgatagatacctcgatggcttctgaaaagcgcagcattctggtccattaaa 183349  T
Q  299 aaatgatctcgttgctcctgtctctgatatctctg 333  Q
    ||||||||||| ||||||||  |||| ||||||||    
T  183348 aaatgatctcgctgctcctgcatctggtatctctg 183314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 336
Target Start/End: Complemental strand, 29225185 - 29224847
Alignment:
Q  4 atgtcaaagcaaaacaataagcatcaat-----aaaaaact-caaaactgcggatcactggttcgccgcatcatcactcatgtcatccactccatgaaca 97  Q
    |||||||||||||||||||||||||||      |||||||| |||||||||| |||  ||||| |||||||||||   ||||||||||||||||||||||    
T  29225185 atgtcaaagcaaaacaataagcatcaaataaaaaaaaaactacaaaactgcg-atccatggtttgccgcatcatcctccatgtcatccactccatgaaca 29225087  T
Q  98 ctagcggtcctatcatcatattccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctatccccaggccacatgcaagactccatgaatgact 197  Q
     |||| ||||| ||||||| ||||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||    
T  29225086 ttagcagtcctctcatcatcttccgttgcaccatagtgttcaccccctccatagaaagtaggcctgtccccaggccacatgcaagactacacgaatgact 29224987  T
Q  198 caggtgtgagcatctggtaggcagggtctaggcgggcatcatagagagactgatagatgcctcggtggctcctgaaaagcgcaacattctagtccattaa 297  Q
    ||||||||||||||||||| || |||| | |||| |||| ||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  29224986 caggtgtgagcatctggtatgcggggttttggcgagcattatagagagactgatagatgcctcggtggctcctgaaaagtgcagcattctggtccattaa 29224887  T
Q  298 -aaaatgatctcgttgctcctgtctctgatatctctgctc 336  Q
     |||||||||||| ||||||||||||||||||||||||||    
T  29224886 aaaaatgatctcgctgctcctgtctctgatatctctgctc 29224847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 336
Target Start/End: Complemental strand, 29338484 - 29338146
Alignment:
Q  4 atgtcaaagcaaaacaataagcatcaat-----aaaaaact-caaaactgcggatcactggttcgccgcatcatcactcatgtcatccactccatgaaca 97  Q
    |||||||||||||||||||||||||||      |||||||| |||||||||| |||  ||||| |||||||||||   ||||||||||||||||||||||    
T  29338484 atgtcaaagcaaaacaataagcatcaaataaaaaaaaaactacaaaactgcg-atccatggtttgccgcatcatcctccatgtcatccactccatgaaca 29338386  T
Q  98 ctagcggtcctatcatcatattccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctatccccaggccacatgcaagactccatgaatgact 197  Q
     |||| ||||| ||||||| ||||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||    
T  29338385 ttagcagtcctctcatcatcttccgttgcaccatagtgttcaccccctccatagaaagtaggcctgtccccaggccacatgcaagactacacgaatgact 29338286  T
Q  198 caggtgtgagcatctggtaggcagggtctaggcgggcatcatagagagactgatagatgcctcggtggctcctgaaaagcgcaacattctagtccattaa 297  Q
    ||||||||||||||||||| || |||| | |||| |||| ||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  29338285 caggtgtgagcatctggtatgcggggttttggcgagcattatagagagactgatagatgcctcggtggctcctgaaaagtgcagcattctggtccattaa 29338186  T
Q  298 -aaaatgatctcgttgctcctgtctctgatatctctgctc 336  Q
     |||||||||||| ||||||||||||||||||||||||||    
T  29338185 aaaaatgatctcgctgctcctgtctctgatatctctgctc 29338146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 108 - 332
Target Start/End: Complemental strand, 1952974 - 1952753
Alignment:
Q  108 tatcatcatattccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctatccccaggccacatgcaagactccatgaatgactcaggtgtgag 207  Q
    ||||||||| ||||| ||||||| |||| |||| |||||| |||||||| || || ||||||||||||||||||||| ||||| |||||| |||||| |     
T  1952974 tatcatcatcttccgttgcaccatagtgctcactccctccatagaaagttggtctgtccccaggccacatgcaagacgccatgtatgactgaggtgtcaa 1952875  T
Q  208 catctggtaggcagggtctaggcgggcatcatagagagactgatagatgcctcggtggctcctgaaaagcgcaacattctagtccattaaaaaatgatct 307  Q
    ||||||||| || ||||||||||| |||||||| |||||||||||   |||| |||| ||||||||||||||| | |||| ||||||||  ||||||||     
T  1952874 catctggtatgcggggtctaggcgagcatcataaagagactgata---gccttggtgactcctgaaaagcgcagcgttctggtccattatgaaatgatcc 1952778  T
Q  308 cgttgctcctgtctctgatatctct 332  Q
     | ||||| ||| ||||||||||||    
T  1952777 tgctgctcatgtttctgatatctct 1952753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 104 - 338
Target Start/End: Original strand, 1949440 - 1949671
Alignment:
Q  104 gtcctatcatcatattccgctgcaccaaagtgttcaccccctccgtagaaagtaggcctatccccaggccacatgcaagactccatgaatgactcaggtg 203  Q
    ||||||||||||| ||||| ||||||| |||| |||  |||||| |||||||| ||||| |||||| |||||||||||||| |||   |||||| |||||    
T  1949440 gtcctatcatcatcttccgttgcaccatagtgctcagtccctccatagaaagttggcctgtccccaagccacatgcaagacgccacatatgactgaggtg 1949539  T
Q  204 tgagcatctggtaggcagggtctaggcgggcatcatagagagactgatagatgcctcggtggctcctgaaaagcgcaacattctagtccattaaaaaatg 303  Q
    | | ||||||||| || ||||||||||| |||| ||| |||||||||||   |||| |||| ||||||||||||||| | |||| ||||||||  |||||    
T  1949540 tcaacatctggtatgcggggtctaggcgagcattataaagagactgata---gccttggtgactcctgaaaagcgcagcgttctggtccattatgaaatg 1949636  T
Q  304 atctcgttgctcctgtctctgatatctctgctcct 338  Q
    |||  | ||||||||||||||||||||||| ||||    
T  1949637 atcctgctgctcctgtctctgatatctctgttcct 1949671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 12185161 - 12185091
Alignment:
Q  1 aaaatgtcaaagcaaaa-caataagcatcaataaaaaactcaaaactgcggatcactggttcgccgcatcatc 72  Q
    ||||||||||||||||| || ||||||||| |||||| ||||| |||| | |||| |||||||||||||||||    
T  12185161 aaaatgtcaaagcaaaaacactaagcatcactaaaaa-ctcaagactgtg-atcagtggttcgccgcatcatc 12185091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University