View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13810_high_9 (Length: 332)
Name: NF13810_high_9
Description: NF13810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13810_high_9 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 18152918 - 18153245
Alignment:
| Q |
1 |
caccgaacccctcgagcgcccaaacctccatttcgcctacccgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18152918 |
caccgaacccctcgagcgcccaaacctccatttcgcctacccgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatg |
18153017 |
T |
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| Q |
101 |
tccactggaacgtccatgtattttatcatcaacttgatgaattaatttcaaaatataaggctttcctattataacaggctgttcaaaaagattccctgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18153018 |
tccactggaacgtccatgtattttatcatcaacttgatgaattaatttcaaaatataaggctttcctattataacaggctgttcaaaaagattccctgtt |
18153117 |
T |
|
| Q |
201 |
cttccatcaaatattccgctctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggcttcatataattcagaaaacacaagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18153118 |
cttccatcaaatattccgctctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggcttcatataattcagaaaacacaagtt |
18153217 |
T |
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| Q |
301 |
ttctggaagcctcctgttcatctctctc |
328 |
Q |
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||||||||||||||||||||| |||||| |
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| T |
18153218 |
ttctggaagcctcctgttcatatctctc |
18153245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 1785810 - 1785691
Alignment:
| Q |
9 |
ccctcgagcgcccaaacctccatttcgcctacccgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactgg |
108 |
Q |
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| T |
1785810 |
ccctcgagcgcccaaacctccatttcgcctacccgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactgg |
1785711 |
T |
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| Q |
109 |
aacgtccatgtattttatca |
128 |
Q |
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| T |
1785710 |
aacgtccatgtattttatca |
1785691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 222773 - 222463
Alignment:
| Q |
18 |
gcccaaacctccatttcgcctacccgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatgtccactggaacgtccat |
117 |
Q |
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|||||||| |||||||| ||||| |||||||| ||||| || || |||||| ||| ||||||||||||||||||| || | ||| | ||||| |||| |
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| T |
222773 |
gcccaaacttccatttctcctactcgttgtcccccttgcttggctcttcctctaaccggttgttgtgtaacaagtgagtagggcccagtagaacgcccat |
222674 |
T |
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| Q |
118 |
gtattttatcatcaacttgatgaattaatttcaaaatataaggctttcctattataacaggctgttcaaaaagattccctgttcttccatcaaatattcc |
217 |
Q |
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| T |
222673 |
gaattttctcatcaacttgatgaattaattttaagatataggacttccctattagaacaggttgctcaaaggggtcgcctgttcttccatcaaatattct |
222574 |
T |
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| Q |
218 |
gctctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggcttcatataattcagaaaacacaagttttctggaagcctcctgt |
317 |
Q |
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||| |||||||| |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| || |
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| T |
222573 |
gctttttcccgggtactcgggttcaaatacccatggattttttgtttctttactggcttcatataattctgaaaacacaagttttcttgaagcctcttgc |
222474 |
T |
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| Q |
318 |
tcatctctctc |
328 |
Q |
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|||| |||||| |
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| T |
222473 |
tcatatctctc |
222463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 23937203 - 23937344
Alignment:
| Q |
1 |
caccgaacccctcgagcgcccaaacctccatttcgcctacccgttgtcctccttgtttcgcccttcctttaaggggttgttgtgtaacaagtgcataatg |
100 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23937203 |
caccaaacccctcgagcgcccaaacctccattttgcctaccagttgtcctccttgtttcacccttcctttaaggggttgttgtgtaacaagtgcataatg |
23937302 |
T |
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| Q |
101 |
tccactggaacgtccatgtattttatcatcaacttgatgaat |
142 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23937303 |
tccactgaaacgtccatgtattttatcatcaacttgatgaat |
23937344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 47586066 - 47586031
Alignment:
| Q |
171 |
ataacaggctgttcaaaaagattccctgttcttcca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
47586066 |
ataacaggctgttcaaaaagattccctgttcttcca |
47586031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 22998200 - 22998273
Alignment:
| Q |
201 |
cttccatcaaatattccgctctttcccggatactcgggttcaaatatccatggattcgatgtttgtttactggc |
274 |
Q |
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||||||| ||||||| |||| ||||||||||||| || | |||||| |||||||| ||||||| |||| |||| |
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| T |
22998200 |
cttccataaaatatttcgctttttcccggatacttaggctgaaatattcatggattggatgtttctttattggc |
22998273 |
T |
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