View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13811_high_2 (Length: 418)
Name: NF13811_high_2
Description: NF13811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13811_high_2 |
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| [»] scaffold0121 (1 HSPs) |
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| [»] scaffold0289 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 415
Target Start/End: Complemental strand, 40293465 - 40293063
Alignment:
| Q |
13 |
gtttttgtttgtttgacgcgcatctatatgaactattgccatacacgtattatagaataagttacttatcttcaaagctctttgctggtacgacccgtgc |
112 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
40293465 |
gtttttgtttgtttgacgcgcatcaatatgaactattgccatacacttattatagaataagttacttatcttcgaagctctttgctggtatgacccgtgc |
40293366 |
T |
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| Q |
113 |
ggagcacgggtcgatggtctagttatcctaaacacaaatattattagggtaagtttgtgaagcaaaacccnnnnnnnnnnnnnnnngtgaaaatagctta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40293365 |
ggagcacgggtcgatggtctagttatcctaaacacaaatattattagggtaagtttgtgaagcaaaacccttttttattttattttgtgaaaatagctta |
40293266 |
T |
|
| Q |
213 |
accttgacgattagactctcttgcgtgacacgaaatctaagttaagtgtgaatgaattaggtttaatcttactgttgtgaaggtggctttgatggagcct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40293265 |
accttgacgattagactctcttgcgtgacacgaaatctaagttaagtgtgaatgaattaggtttaatcttactgttgtgaaggtggctttgatggagcct |
40293166 |
T |
|
| Q |
313 |
ttccttgtttttggcggcattacttgcttcgctgctgctgctgcttatgtttccgccagaaccagtgacaagtatgtacttatctcctcaatctgctgtt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40293165 |
ttccttgtttttggcggcattacttgcttcgctgctgctgctgcttacgtttccgccagaaccagtgacaagtatgtacttatctccacaatctgctgtt |
40293066 |
T |
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| Q |
413 |
act |
415 |
Q |
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||| |
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| T |
40293065 |
act |
40293063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 39333005 - 39332968
Alignment:
| Q |
98 |
tggtacgacccgtgcggagcacgggtcgatggtctagt |
135 |
Q |
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| T |
39333005 |
tggtaggacccgtgcggagcacgggtcgatagtctagt |
39332968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 42084356 - 42084394
Alignment:
| Q |
98 |
tggtacgacccgtgcggagcacgggtcgatggtctagtt |
136 |
Q |
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| T |
42084356 |
tggtaggacccgtgcggagcacgggtcgatggtctagtt |
42084394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 25892 - 25932
Alignment:
| Q |
96 |
gctggtacgacccgtgcggagcacgggtcgatggtctagtt |
136 |
Q |
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| T |
25892 |
gctggtaagacccgtgcggagcatgggtcgatggtctagtt |
25932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 11481874 - 11481834
Alignment:
| Q |
96 |
gctggtacgacccgtgcggagcacgggtcgatggtctagtt |
136 |
Q |
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| T |
11481874 |
gctggtaggacccgtgcggagcacgggtcaatggtctagtt |
11481834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 9095 - 9056
Alignment:
| Q |
96 |
gctggtacgacccgtgcggagcacgggtcgatggtctagt |
135 |
Q |
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| T |
9095 |
gctggtatgacccgtgcggagcactggtcgatggtctagt |
9056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 5338244 - 5338283
Alignment:
| Q |
96 |
gctggtacgacccgtgcggagcacgggtcgatggtctagt |
135 |
Q |
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||||||| ||||| |||||||||||||||||||||||||| |
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| T |
5338244 |
gctggtaggacccttgcggagcacgggtcgatggtctagt |
5338283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 11856248 - 11856210
Alignment:
| Q |
98 |
tggtacgacccgtgcggagcacgggtcgatggtctagtt |
136 |
Q |
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| T |
11856248 |
tggtaggacccgtgcggagcacgggtcaatggtctagtt |
11856210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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