View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13811_high_5 (Length: 238)
Name: NF13811_high_5
Description: NF13811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13811_high_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 14587857 - 14588078
Alignment:
| Q |
17 |
accatttggcttccatttccacttaacataatcagaatcaggtctaccattaagatgacaatcaaaatccctatccacaaatggacaagaacccaattca |
116 |
Q |
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| T |
14587857 |
accatttggcttccatttccacttaacataatcagaatcaggtctaccattaagatgacaatcaaaatccctatccacaaatggacaagaacccaattca |
14587956 |
T |
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| Q |
117 |
taatatggctttgaatcatctctcacccaattcccatcaaatatatcacacttttcatcaaatttcccatctttcaaattttcttccaccaccacagaac |
216 |
Q |
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| T |
14587957 |
taatatggctttgaatcatctctcacccaattcccatcaaatatatcacacttttcatcaaatttcccatctttcaaattttcttccaccgccacagaac |
14588056 |
T |
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| Q |
217 |
cactcaaattctcatcaatttc |
238 |
Q |
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| T |
14588057 |
cactcaaattctcatcaatttc |
14588078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 29449798 - 29449944
Alignment:
| Q |
20 |
atttggcttccatttccacttaacataatcagaatcaggtctaccattaagatgacaatcaaaatccctatccacaaatggacaagaacccaattcataa |
119 |
Q |
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| T |
29449798 |
atttggcttccacttccattttacatattcaagatcaagcctcccattaagatgacaattaaaatctctatcaatgaagggacaagaacctaaaggataa |
29449897 |
T |
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| Q |
120 |
tatggctttgaatcatctctcacccaattcccatcaaatatatcaca |
166 |
Q |
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| T |
29449898 |
tatggctttgaatcatctcttacccactttccatcaaagatatcaca |
29449944 |
T |
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