View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13811_low_3 (Length: 356)
Name: NF13811_low_3
Description: NF13811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13811_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 349
Target Start/End: Complemental strand, 85243 - 84903
Alignment:
| Q |
9 |
cagaacctgtgagtgaaatgtttgctagaatccgtgcataaaatcatgttatttctttatagccatctttgccaaattctattagaattataatttaatt |
108 |
Q |
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| T |
85243 |
cagaacttgtgagtgaaatgtttgctagaatccgtgcataaaatcatgttatttctttatagccatctttgccaaattctattagaattataatttaatt |
85144 |
T |
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| Q |
109 |
gccaaatgcaatcacaaaatttaacatatcttacaaaagcaagcaacccaatttggcttacctagcagacacatctgtttgttgtcaattctaggttatt |
208 |
Q |
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| T |
85143 |
gccaaatgcaatcacaaaatttaacatatcttacaaaagcaagcaacccaatttggcttacctagcagacacatctgtttgttgtcaattctaggttatt |
85044 |
T |
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| Q |
209 |
ttatttacacgattacatcacagttagtgctggattcttgtgctgttttcttttgtatattttnnnnnnnttttctttaatcgaatgaaatcaattgtaa |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
85043 |
ttatttacacgattacatcacagttagtgctggattcttgtgctgttttcttttgtatattttcccccccttttctttaatcgaatgaaatcaattgtaa |
84944 |
T |
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| Q |
309 |
tttttatttcaataatatatttcccatgcacaggttctgct |
349 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
84943 |
tttttatttcaataatatatttcccatgcacaggctctgct |
84903 |
T |
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