View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13811_low_4 (Length: 340)
Name: NF13811_low_4
Description: NF13811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13811_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 140 - 321
Target Start/End: Complemental strand, 31863868 - 31863687
Alignment:
| Q |
140 |
cttgcatgaaatatgtaacaaactctaagcttcaaatagtaatacactaatactatactatataattaaattaaatgtgacaaacatgaataagtttacc |
239 |
Q |
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| T |
31863868 |
cttgcatgaaatatgtaacaaactctaagcttcaaatagtaatacactaatactatactatataattaaattaaatgtgacaaacatgaataagtttacc |
31863769 |
T |
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| Q |
240 |
ttatcagacttaggaataagttttctaagattagcaagctgtgtattaatcctgtctctacgtcttttctctgcttgactat |
321 |
Q |
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| T |
31863768 |
ttatcagacttgggaataagttttctaagattagcaagctgtgtattaatcctgtctctacgtcttttctctgcttgactat |
31863687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 31863963 - 31863865
Alignment:
| Q |
12 |
aattctatggaagtttcaaaagatagcttttgtcaaaatcacaataggacacttattcttcaaagcctgaattgaatgaatgcaacatcttatcacttg |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31863963 |
aattttatggaagtttcaaaagatagcttttgtcaaaatcacaatagcacacttattcttcaaagcctgaattgaatgaatgcaacatcttatcacttg |
31863865 |
T |
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