View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13812_high_1 (Length: 862)

Name: NF13812_high_1
Description: NF13812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13812_high_1
NF13812_high_1
[»] chr1 (9 HSPs)
chr1 (172-847)||(12526326-12527016)
chr1 (38-133)||(12526192-12526287)
chr1 (772-847)||(10349539-10349614)
chr1 (772-847)||(20819603-20819678)
chr1 (772-843)||(33567153-33567224)
chr1 (772-836)||(7637638-7637702)
chr1 (772-847)||(24509317-24509391)
chr1 (772-845)||(39581426-39581499)
chr1 (10-41)||(12526110-12526141)
[»] chr7 (17 HSPs)
chr7 (772-847)||(41242163-41242238)
chr7 (772-847)||(42453640-42453715)
chr7 (772-837)||(7566944-7567009)
chr7 (772-847)||(22681441-22681516)
chr7 (775-847)||(14241299-14241371)
chr7 (772-836)||(32215580-32215644)
chr7 (776-836)||(13427953-13428013)
chr7 (772-847)||(6459097-6459171)
chr7 (772-837)||(22358695-22358759)
chr7 (775-836)||(38651307-38651368)
chr7 (772-836)||(40451840-40451905)
chr7 (772-836)||(3091997-3092061)
chr7 (775-847)||(17263394-17263465)
chr7 (772-836)||(21120598-21120662)
chr7 (772-836)||(38889938-38890002)
chr7 (772-836)||(43656138-43656201)
chr7 (772-836)||(45140133-45140197)
[»] chr3 (7 HSPs)
chr3 (772-847)||(7638885-7638960)
chr3 (772-847)||(21477741-21477815)
chr3 (772-836)||(10773250-10773314)
chr3 (772-838)||(41748780-41748846)
chr3 (772-847)||(12215524-12215597)
chr3 (772-847)||(30188557-30188632)
chr3 (772-834)||(25280389-25280451)
[»] chr4 (23 HSPs)
chr4 (772-844)||(46191195-46191267)
chr4 (772-847)||(13159699-13159774)
chr4 (772-837)||(44546640-44546705)
chr4 (772-847)||(16736169-16736245)
chr4 (772-847)||(135821-135895)
chr4 (772-847)||(1463337-1463412)
chr4 (772-847)||(22322413-22322488)
chr4 (772-837)||(41007246-41007311)
chr4 (772-847)||(17186272-17186347)
chr4 (772-847)||(37013918-37013993)
chr4 (772-837)||(39868337-39868402)
chr4 (772-836)||(17712673-17712737)
chr4 (772-838)||(13317640-13317706)
chr4 (773-847)||(20177379-20177453)
chr4 (772-836)||(36825778-36825843)
chr4 (772-837)||(55284841-55284906)
chr4 (779-835)||(7272697-7272753)
chr4 (772-836)||(26893359-26893423)
chr4 (772-836)||(42396697-42396761)
chr4 (772-836)||(48782508-48782572)
chr4 (772-835)||(28709179-28709242)
chr4 (772-846)||(14546350-14546424)
chr4 (772-837)||(24010510-24010575)
[»] chr5 (17 HSPs)
chr5 (772-847)||(23257167-23257242)
chr5 (772-847)||(26397286-26397361)
chr5 (772-847)||(37268335-37268410)
chr5 (772-846)||(21269879-21269953)
chr5 (772-846)||(21271893-21271967)
chr5 (772-837)||(40632648-40632713)
chr5 (775-847)||(7123934-7124006)
chr5 (772-847)||(17945875-17945949)
chr5 (772-846)||(38099573-38099646)
chr5 (772-836)||(21825219-21825284)
chr5 (772-848)||(15504898-15504973)
chr5 (772-835)||(13390352-13390415)
chr5 (772-838)||(17696034-17696100)
chr5 (772-836)||(1585483-1585547)
chr5 (772-832)||(41211581-41211641)
chr5 (775-836)||(18149364-18149425)
chr5 (772-837)||(20251511-20251576)
[»] chr2 (15 HSPs)
chr2 (772-847)||(12915760-12915835)
chr2 (772-847)||(2220097-2220172)
chr2 (772-837)||(3376146-3376211)
chr2 (772-847)||(42184095-42184170)
chr2 (772-847)||(45701188-45701263)
chr2 (772-847)||(45468150-45468226)
chr2 (772-847)||(17607654-17607729)
chr2 (772-847)||(39994675-39994749)
chr2 (772-813)||(26405036-26405077)
chr2 (772-844)||(28209993-28210065)
chr2 (772-847)||(28543776-28543851)
chr2 (772-847)||(1206438-1206513)
chr2 (776-847)||(32603322-32603392)
chr2 (772-847)||(41647138-41647213)
chr2 (772-817)||(33006689-33006734)
[»] chr8 (6 HSPs)
chr8 (772-837)||(17936354-17936419)
chr8 (772-847)||(15172817-15172892)
chr8 (772-835)||(29934709-29934772)
chr8 (772-847)||(21313796-21313872)
chr8 (772-835)||(1219198-1219261)
chr8 (772-801)||(19712780-19712809)
[»] chr6 (10 HSPs)
chr6 (772-836)||(18489749-18489813)
chr6 (772-847)||(14781983-14782058)
chr6 (772-836)||(16477626-16477691)
chr6 (775-836)||(25026737-25026798)
chr6 (775-847)||(2854115-2854186)
chr6 (772-847)||(5675491-5675566)
chr6 (772-847)||(25186763-25186838)
chr6 (772-847)||(31848054-31848128)
chr6 (772-847)||(4103083-4103158)
chr6 (772-836)||(31794673-31794737)
[»] scaffold1251 (1 HSPs)
scaffold1251 (775-837)||(861-922)
[»] scaffold0423 (1 HSPs)
scaffold0423 (772-847)||(10015-10090)
[»] scaffold0267 (1 HSPs)
scaffold0267 (772-836)||(10996-11060)
[»] scaffold0116 (1 HSPs)
scaffold0116 (772-847)||(42189-42263)
[»] scaffold0074 (1 HSPs)
scaffold0074 (772-847)||(36042-36117)


Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 172 - 847
Target Start/End: Original strand, 12526326 - 12527016
Alignment:
Q  172 tcagcacctttaattattcgtgttcagttagctagcattcattgattggttctctactcatttatttcataaagaagaagaatatagcatatatagattc 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12526326 tcagcacctttaattattcgtgttcagttagctagcattcattgattggttctctactcatttatttcataaagaagaagaacatagcatatatagattc 12526425  T
Q  272 taaccaattattcatctctcccactatgaaacacacctctctccatgggacacgttgaactagtatannnnnnngtatggttaaaaaa-tattcaagaat 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| |||||||||||    
T  12526426 taaccaattattcatctctcccactatgaaacacacctctctccatgggacacgttgaactagtatatttttttgtatggttaaaaaaatattcaagaat 12526525  T
Q  371 ttatttc----------------attattggcattctagatgaagatgcatgcaagtggataagttcatgttaaaatttcattatgaagatattgctcct 454  Q
    |||||||                ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  12526526 ttatttccttagatttaattttcattattggcattctagatgaagatgcatgcaagtggataagttcatgctaaaatttcattctgaagatattgctcct 12526625  T
Q  455 aaaaggctagaaggtagaaaactataaattaaggtaggtatttattcgtacatcctttatttaaaaatttaaaactgattttggtggcgtgcttgtcatg 554  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12526626 aagaggctagaaggtagaaaactataaattaaggtaggtatttattcgtacatcctttatttaaaaatttaaaaatgattttggtggcgtgcttgtcatg 12526725  T
Q  555 ccacatatatatccttagcttttagaatttcattctttgcttcattataggaagtaaactgtaacttagatt-aatttcattataatgttaggttccaat 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12526726 ccacatatatatccttagcttttagaatttcattctttgcttcattataggaagtaaactgtaacttagattaaatttcattataatgttaggttccaat 12526825  T
Q  654 cataaagttgccattctagtgaggatacacatacacctaaaagaaattacatgcgatatacgtcaaaagatttgaataaataactgaatttatttcatta 753  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  12526826 cataaagttgccattctagtgaggatacacatacacctaaaagaaattacatgccatatacgtcaaaagatttgaataaataactgaatttatttcgtta 12526925  T
Q  754 tatagannnnnnnnnnnnaacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||            |||||||||||||| |||||||| |||||| ||||||||||| | ||   ||||||| ||| ||||||||| ||||    
T  12526926 tataga---tttttttttaacaaatcaaaatgaaatatattgctcaaatgaaaagtgattaatcctgtataaggtttgcaaaaattgataaatc 12527016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 12526192 - 12526287
Alignment:
Q  38 acaactattgcataagaattagatcaagtaagtatcaaaacaaataactctcactttcttgaaagttcatcatgtttgattctttgatgagataag 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12526192 acaactattgcataagaattagatcaagtaagtatcaaaacaaataactctcactttcttgaaagttcatcatgtttgattctttgatgagataag 12526287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 10349614 - 10349539
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||| |||||||  ||||||||||||||  || |||||||||||||| |||||||||    
T  10349614 aacaaatcaaaatggaatatattgctcaaactgaaagtgattcaccctgcacaaggtgtgctaaaagtgatgaatc 10349539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 20819603 - 20819678
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||  || ||||||||||||||  ||||||||    
T  20819603 aacaaatcaaaatggaatatattgctcaaaagaaaagtgattcacccagcacaaggtgtgctaaaaacgatgaatc 20819678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 772 - 843
Target Start/End: Original strand, 33567153 - 33567224
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatg 843  Q
    |||||||||||| ||||||||| | ||||||||||||| |||||||||| |||||||||| ||||| |||||    
T  33567153 aacaaatcaaaacggaatatatcattcaaacgaaaagtaattcaccccatataaggtgtgttaaaagtgatg 33567224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 772 - 836
Target Start/End: Original strand, 7637638 - 7637702
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||||||||||| ||||||| |||||| |||| |||||||||||| || |||||||||||||    
T  7637638 aacaaatcaaaatgggatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtgctaaa 7637702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 24509317 - 24509391
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||| ||| || ||||||||||||||  ||||||||    
T  24509317 aacaaatcaaaatggaatatattgctcaaaagaagagtgattca-cccgcacaaggtgtgctaaaaacgatgaatc 24509391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 772 - 845
Target Start/End: Complemental strand, 39581499 - 39581426
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaa 845  Q
    ||||||||||||| | |||||||  ||||||||| ||||||||||||| || ||| | |||||||| |||||||    
T  39581499 aacaaatcaaaataggatatattgttcaaacgaatagtgattcaccccgcacaagatatgctaaaagtgatgaa 39581426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 12526110 - 12526141
Alignment:
Q  10 agagagatgaatacaaatgacgcagatcacaa 41  Q
    ||||||||||||||||||||||||||||||||    
T  12526110 agagagatgaatacaaatgacgcagatcacaa 12526141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 6e-30; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 41242163 - 41242238
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  41242163 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccgcacaaggtgtgctaaaattgatgaatc 41242238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 42453715 - 42453640
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| |||||||||    
T  42453715 aacaaataaaaatggaatatattgctcaaacgaacagtgattcaccccgcataaggtgtgctaaaagtgatgaatc 42453640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 772 - 837
Target Start/End: Original strand, 7566944 - 7567009
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaa 837  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||    
T  7566944 aacaaatcaaaatggaatatattgctcaaaggaaaaatgattcaccccgcataaggtgtgctaaaa 7567009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 22681441 - 22681516
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||||||| || ||||||||||||||  ||||||||    
T  22681441 aacaaatcaaaatggaatatattgctcaaaagaagagtgattcaccccgcacaaggtgtgctaaaaacgatgaatc 22681516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 775 - 847
Target Start/End: Complemental strand, 14241371 - 14241299
Alignment:
Q  775 aaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||| |||||||| || ||||||||||||||||||||| || ||| |||||||||| |||||||||    
T  14241371 aaatcaaaatgaaatatattgctaaaacgaaaagtgattcaccccgcacaagatgtgctaaaagtgatgaatc 14241299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 772 - 836
Target Start/End: Original strand, 32215580 - 32215644
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||||||||||||||||||||||||||   | ||||||||||||| || |||||||||||||    
T  32215580 aacaaatcaaaatggaatatattactcaaaaacagagtgattcaccccgcacaaggtgtgctaaa 32215644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 776 - 836
Target Start/End: Original strand, 13427953 - 13428013
Alignment:
Q  776 aatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    |||||||||| |||||||| |||||| |||| ||||||||||||||| |||||||| ||||    
T  13427953 aatcaaaatgaaatatattgctcaaaagaaaggtgattcaccccacacaaggtgtgttaaa 13428013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 6459171 - 6459097
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||  || || |||||||||||  ||||||||    
T  6459171 aacaaatcaaaatgaaatatattgctcaaaagaaaagtgattcaccctgcacaa-gtgtgctaaaagcgatgaatc 6459097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 772 - 837
Target Start/End: Original strand, 22358695 - 22358759
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaa 837  Q
    |||||||||||||||| || ||  |||||| | ||||||||||||||| |||||||||||||||||    
T  22358695 aacaaatcaaaatggattaaatg-ctcaaaagcaaagtgattcaccccgcataaggtgtgctaaaa 22358759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 775 - 836
Target Start/End: Complemental strand, 38651368 - 38651307
Alignment:
Q  775 aaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||||||||||||||||  ||||| | | ||||||||||||| |||||||| |||||||    
T  38651368 aaatcaaaatggaatatattgttcaaaagcatagtgattcaccccgcataaggtatgctaaa 38651307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 772 - 836
Target Start/End: Original strand, 40451840 - 40451905
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaa-aagtgattcaccccacataaggtgtgctaaa 836  Q
    |||||||||||||||| ||||||  ||||||||| |||||||||||| || |||| ||||||||||    
T  40451840 aacaaatcaaaatggattatattgttcaaacgaataagtgattcacctcaaataaagtgtgctaaa 40451905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 772 - 836
Target Start/End: Complemental strand, 3092061 - 3091997
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||||||||| | ||||||| |||||| | ||||||||||||||  |||||||||| |||||    
T  3092061 aacaaatcaaaataggatatattgctcaaaagcaaagtgattcaccctgcataaggtgtactaaa 3091997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 775 - 847
Target Start/End: Complemental strand, 17263465 - 17263394
Alignment:
Q  775 aaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||  |||| |||||||||||||||||   | ||||||||||||||  ||||||||    
T  17263465 aaatcaaaatggaatatattgttcaa-cgaaaagtgattcaccctgtacaaggtgtgctaaaagagatgaatc 17263394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 772 - 836
Target Start/End: Complemental strand, 21120662 - 21120598
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||||||||||||||||||| |||||| | |  |||||||| ||| || |||||||||||||    
T  21120662 aacaaatcaaaatggaatatattgctcaaaagcagtgtgattcatcccgcacaaggtgtgctaaa 21120598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 772 - 836
Target Start/End: Complemental strand, 38890002 - 38889938
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||| ||||| ||||||||| |||||| |||| |||||||||||| || ||||||| |||||    
T  38890002 aacaaattaaaatagaatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtactaaa 38889938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 772 - 836
Target Start/End: Complemental strand, 43656201 - 43656138
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||| |||||||||||||||||||||| |  |||||||||| ||| || |||||||||||||    
T  43656201 aacaaattaaaatggaatatattactcaaaag-taagtgattcatcccgcacaaggtgtgctaaa 43656138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 772 - 836
Target Start/End: Original strand, 45140133 - 45140197
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||| ||||||| |||||||  ||||| |||| |||||||||||| || |||||||||||||    
T  45140133 aacaaattaaaatgggatatattgttcaaaagaaaggtgattcaccccgcacaaggtgtgctaaa 45140197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 7638885 - 7638960
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||    
T  7638885 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccgcataaggtgtactaaaagtgatgaatc 7638960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 21477741 - 21477815
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||||||||||   | ||||||||||||| || |||||||||||||| |||||||||    
T  21477741 aacaaatcaaaatggaatatattactcaaagacagagtgattcaccccgcacaaggtgtgctaaaa-tgatgaatc 21477815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 772 - 836
Target Start/End: Complemental strand, 10773314 - 10773250
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||||||||||| ||||||| |||||| |||| |||||||||||| || |||||||||||||    
T  10773314 aacaaatcaaaatgggatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtgctaaa 10773250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 772 - 838
Target Start/End: Complemental strand, 41748846 - 41748780
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaat 838  Q
    |||||||||||||||||||||||  ||||| |||| ||| ||||||||| | |||||||||||||||    
T  41748846 aacaaatcaaaatggaatatattgttcaaaagaaaggtggttcaccccatacaaggtgtgctaaaat 41748780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 12215597 - 12215524
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||| ||||||||||||||||||   | ||||||||||||| || |||||||||||||| |||||||||    
T  12215597 aacaaatcaaagtggaatatattactcaaa-acagagtgattcaccccgcacaaggtgtgctaaaa-tgatgaatc 12215524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 30188632 - 30188557
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||| ||||| ||||||||| ||||||||||| |||||||||||| ||  || |||||||| | |||||||||    
T  30188632 aacaaataaaaatagaatatattgctcaaacgaaaggtgattcaccccgcactagatgtgctaagagtgatgaatc 30188557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 772 - 834
Target Start/End: Original strand, 25280389 - 25280451
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgcta 834  Q
    |||||||||||||||||||||||||||||| ||  | ||||||||||| || ||| |||||||    
T  25280389 aacaaatcaaaatggaatatattactcaaaagaggaatgattcaccccgcacaagatgtgcta 25280451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 772 - 844
Target Start/End: Original strand, 46191195 - 46191267
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatga 844  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| || || ||||||||||| ||||||    
T  46191195 aacaaatcaaaatggaatatattgctcaaacgaaaagtgattcaccccgcacaatgtgtgctaaaaatgatga 46191267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 13159699 - 13159774
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| || || ||||||||||| || ||||||    
T  13159699 aacaaatcaaaatggaatatattgctcaaacgaaaagtgattcaccccgcacaaagtgtgctaaaagtggtgaatc 13159774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 772 - 837
Target Start/End: Complemental strand, 44546705 - 44546640
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaa 837  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||| || ||||||||||||||    
T  44546705 aacaaatcaaaatggaatatattgctcaaaggaaaagtgattcaccccgcacaaggtgtgctaaaa 44546640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 16736169 - 16736245
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaag-tgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    |||||||||||||| | |||||| ||||||||||||  |||||||||||||||||| |||||||||| |||||||||    
T  16736169 aacaaatcaaaatgaattatattgctcaaacgaaaaaatgattcaccccacataagatgtgctaaaagtgatgaatc 16736245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 135821 - 135895
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||  | |||||||||||| | |||||||||    
T  135821 aacaaatcaaaatggaatatattgctcaaacg-aaagtgattcaccccgtacaaggtgtgctaagagtgatgaatc 135895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 1463412 - 1463337
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||| ||| ||| |||||| | ||||| ||||||||| ||||||||||||||||| |||||||||    
T  1463412 aacaaatcaaaatggtataaattgctcaaaggcaaagtcattcaccccgcataaggtgtgctaaaagtgatgaatc 1463337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 22322413 - 22322488
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||| |||  ||||| | ||||||||||| ||| ||||||||||||||||| |||||||||    
T  22322413 aacaaatcaaaatggaataaattgttcaaaagcaaagtgattcatcccgcataaggtgtgctaaaaatgatgaatc 22322488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 772 - 837
Target Start/End: Complemental strand, 41007311 - 41007246
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaa 837  Q
    |||||||||||||| ||||||||||||| | ||||||||||||| ||||||||||  |||||||||    
T  41007311 aacaaatcaaaatgaaatatattactcagatgaaaagtgattcatcccacataagacgtgctaaaa 41007246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 17186347 - 17186272
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||| ||| || ||||| ||||||||  ||||||||    
T  17186347 aacaaatcaaaatggaatatattgctcaaaagaagagtgattcatcccgcacaaggtatgctaaaaacgatgaatc 17186272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 37013918 - 37013993
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||| |||||| | | | || ||||||||||||||||| ||||||||  ||||||||    
T  37013918 aacaaatcaaaatggaatatattgctcaaaaggagaatggttcaccccacataaggtatgctaaaagcgatgaatc 37013993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 772 - 837
Target Start/End: Complemental strand, 39868402 - 39868337
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaa 837  Q
    ||||||||||||||||||||||| || ||| ||| ||||| ||||||| || ||||||||||||||    
T  39868402 aacaaatcaaaatggaatatattgctgaaaagaagagtgactcaccccgcacaaggtgtgctaaaa 39868337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 772 - 836
Target Start/End: Original strand, 17712673 - 17712737
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    |||||||||||||||||||||||||||| |   | ||||||||||||| || |||||||||||||    
T  17712673 aacaaatcaaaatggaatatattactcagaaacagagtgattcaccccgcacaaggtgtgctaaa 17712737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 772 - 838
Target Start/End: Original strand, 13317640 - 13317706
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaat 838  Q
    ||||||| |||||||||||||||||||||    | |||||||||||||||| |||||||| ||||||    
T  13317640 aacaaattaaaatggaatatattactcaagaacagagtgattcaccccacacaaggtgtgttaaaat 13317706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 773 - 847
Target Start/End: Original strand, 20177379 - 20177453
Alignment:
Q  773 acaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    |||||||||||| ||||||||| ||||| |||||||||||||||| | || ||| | || ||||| |||||||||    
T  20177379 acaaatcaaaatcgaatatattgctcaatcgaaaagtgattcacctcgcacaagatatgttaaaagtgatgaatc 20177453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 772 - 836
Target Start/End: Original strand, 36825778 - 36825843
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaa-gtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||||||||||||||||||| |||  ||||||| ||||||||||||  |||||||||| ||||    
T  36825778 aacaaatcaaaatggaatatattgctcgcacgaaaaggtgattcaccccgtataaggtgtgttaaa 36825843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 772 - 837
Target Start/End: Original strand, 55284841 - 55284906
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaa 837  Q
    |||||||||||||  |||||||| || |||  || ||||||||||||| |||||||||||||||||    
T  55284841 aacaaatcaaaataaaatatattgctgaaaataatagtgattcaccccgcataaggtgtgctaaaa 55284906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 779 - 835
Target Start/End: Complemental strand, 7272753 - 7272697
Alignment:
Q  779 caaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaa 835  Q
    |||||| ||||||||||||||||  || |||||||||||||  ||||||||||||||    
T  7272753 caaaatagaatatattactcaaattaatagtgattcaccccgtataaggtgtgctaa 7272697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 772 - 836
Target Start/End: Complemental strand, 26893423 - 26893359
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    |||||||||||||||||| |||| |||||| |||| || ||||||||  || |||||||||||||    
T  26893423 aacaaatcaaaatggaatgtattgctcaaaagaaaggtaattcaccctgcacaaggtgtgctaaa 26893359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 772 - 836
Target Start/End: Original strand, 42396697 - 42396761
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||| ||||||||||||||| |||||| |||| |||||| ||||| || ||||| |||||||    
T  42396697 aacaaattaaaatggaatatattgctcaaaagaaaggtgatttaccccgcacaaggtatgctaaa 42396761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 772 - 836
Target Start/End: Original strand, 48782508 - 48782572
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    |||||||||||||| |||| ||| |||||||  ||| |||||||||||||| ||||||| |||||    
T  48782508 aacaaatcaaaatgaaataaattgctcaaaccgaaattgattcaccccacacaaggtgtactaaa 48782572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 835
Target Start/End: Complemental strand, 28709242 - 28709179
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaa 835  Q
    |||||||||||||| ||||||||||||||| ||  | ||||||||||| || ||| ||||||||    
T  28709242 aacaaatcaaaatgaaatatattactcaaaagaggaatgattcaccccgcacaagatgtgctaa 28709179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 772 - 846
Target Start/End: Original strand, 14546350 - 14546424
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaat 846  Q
    ||||||| ||||||||||||| |||| || | || ||  ||||||||| ||||||||||||||||| || |||||    
T  14546350 aacaaatgaaaatggaatatactactgaagccaagagcaattcaccccgcataaggtgtgctaaaagtggtgaat 14546424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 837
Target Start/End: Complemental strand, 24010575 - 24010510
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaa 837  Q
    ||||||||||||| |||||||||  ||||| ||| ||||||||||||| || ||||  ||||||||    
T  24010575 aacaaatcaaaattgaatatattgttcaaatgaagagtgattcaccccgcacaaggcatgctaaaa 24010510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 23257242 - 23257167
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| || ||||||||||||||  ||||||||    
T  23257242 aacaaatcaaaatggaatatattgttcaaacgaaaagtgattcaccccgcacaaggtgtgctaaaaccgatgaatc 23257167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 26397286 - 26397361
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||||||| || |||||||||||||| |||||||||    
T  26397286 aacaaatcaaaatggaatatattgctcaaaagaagagtgattcaccccgcacaaggtgtgctaaaaatgatgaatc 26397361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 37268410 - 37268335
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||  | |||||||||||||| ||| |||||    
T  37268410 aacaaatcaaaatggaatatattgctcaaaggaaaagtgattcaccccgtacaaggtgtgctaaaagtgacgaatc 37268335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 772 - 846
Target Start/End: Original strand, 21269879 - 21269953
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaat 846  Q
    ||||||||||||||| ||||||||||||||| |||||| ||||||||| || |||||||||||||| || |||||    
T  21269879 aacaaatcaaaatggtatatattactcaaaccaaaagtaattcaccccgcacaaggtgtgctaaaagtggtgaat 21269953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 772 - 846
Target Start/End: Original strand, 21271893 - 21271967
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaat 846  Q
    ||||||||||||||| ||||||||||||||| |||||| ||||||||| || |||||||||||||| || |||||    
T  21271893 aacaaatcaaaatggtatatattactcaaaccaaaagtaattcaccccgcacaaggtgtgctaaaagtggtgaat 21271967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 772 - 837
Target Start/End: Original strand, 40632648 - 40632713
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaa 837  Q
    |||||||||||||| |||||||| |||||| ||| ||||||||||||| |||||||||||||||||    
T  40632648 aacaaatcaaaatgaaatatattgctcaaaagaagagtgattcaccccgcataaggtgtgctaaaa 40632713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 775 - 847
Target Start/End: Original strand, 7123934 - 7124006
Alignment:
Q  775 aaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||| |||||||| |||||| | ||||||||||| ||| ||||||||||||||||| |||||||||    
T  7123934 aaatcaaaatgaaatatatttctcaaaagcaaagtgattcaacccgcataaggtgtgctaaaagtgatgaatc 7124006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 17945875 - 17945949
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||||||||||   | ||||||||||||| || |||||||||||||| |||||||||    
T  17945875 aacaaatcaaaatggaatatattactcaaaaacagagtgattcaccccgcacaaggtgtgctaaaa-tgatgaatc 17945949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 772 - 846
Target Start/End: Complemental strand, 38099646 - 38099573
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaat 846  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||| || |||||||| ||| | ||||||||    
T  38099646 aacaaatcaaaatggaatatattactcaaac-aaaaatgattcaccccgcacaaggtgtgataagagtgatgaat 38099573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 772 - 836
Target Start/End: Complemental strand, 21825284 - 21825219
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaa-gtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||||||||||||||||||| |||||| ||||| |||||||||||| || |||||||||||||    
T  21825284 aacaaatcaaaatggaatatattgctcaaaagaaaaggtgattcaccccgcacaaggtgtgctaaa 21825219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 772 - 848
Target Start/End: Complemental strand, 15504973 - 15504898
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatct 848  Q
    |||||||||||||||||||||||||| |||   | ||||||||||||| || |||||||| ||||| ||||||||||    
T  15504973 aacaaatcaaaatggaatatattacttaaaaatagagtgattcaccccgcacaaggtgtgttaaaa-tgatgaatct 15504898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 772 - 835
Target Start/End: Original strand, 13390352 - 13390415
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaa 835  Q
    ||||||||||||||||||||||  |||||| || |||||||||||||| || ||| ||||||||    
T  13390352 aacaaatcaaaatggaatatatagctcaaaagagaagtgattcaccccgcacaagatgtgctaa 13390415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 772 - 838
Target Start/End: Original strand, 17696034 - 17696100
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaat 838  Q
    ||||||||||||| ||||||||||||||||   | ||||||||| ||| || |||||||||||||||    
T  17696034 aacaaatcaaaatagaatatattactcaaaaacagagtgattcatcccgcacaaggtgtgctaaaat 17696100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 772 - 836
Target Start/End: Complemental strand, 1585547 - 1585483
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||||||||| ||||||||| |||||| | | |||||||||||||  | |||||||||||||    
T  1585547 aacaaatcaaaattgaatatattgctcaaaagcagagtgattcaccccgtacaaggtgtgctaaa 1585483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 772 - 832
Target Start/End: Complemental strand, 41211641 - 41211581
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgc 832  Q
    ||||||||||||||| |||||||||||||| |||| |||| ||||||  || |||||||||    
T  41211641 aacaaatcaaaatgggatatattactcaaaagaaaggtgaatcaccctgcacaaggtgtgc 41211581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 775 - 836
Target Start/End: Original strand, 18149364 - 18149425
Alignment:
Q  775 aaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||||||| |||||||| |||||| | || ||| |||||||| || |||||||||||||    
T  18149364 aaatcaaaatgaaatatattgctcaaaagtaaggtggttcaccccgcacaaggtgtgctaaa 18149425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 837
Target Start/End: Original strand, 20251511 - 20251576
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaa 837  Q
    ||||||||||||||||||||||| | |||| || | ||| |||||||  || ||||||||||||||    
T  20251511 aacaaatcaaaatggaatatattgcacaaaagagaggtgtttcaccctgcacaaggtgtgctaaaa 20251576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 12915835 - 12915760
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    |||||||||||||| |||||||| ||||||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  12915835 aacaaatcaaaatgaaatatattgctcaaacgagaagtgattcaccccacacaaggtgtgttaaaactgatgaatc 12915760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 2220097 - 2220172
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    |||||||||||||||| |||||| |||||||||||||||||||||| || | ||| |||||||||| |||||||||    
T  2220097 aacaaatcaaaatggattatattgctcaaacgaaaagtgattcacctcatacaagatgtgctaaaagtgatgaatc 2220172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 772 - 837
Target Start/End: Complemental strand, 3376211 - 3376146
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaa 837  Q
    ||||||||||||| |||||||||||||||| ||| ||||||||||||| || ||||||||||||||    
T  3376211 aacaaatcaaaatagaatatattactcaaaagaagagtgattcaccccgcacaaggtgtgctaaaa 3376146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 42184170 - 42184095
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||| ||||||||||||||||||||| || ||||||||||||| || ||| |||||||||| || ||||||    
T  42184170 aacaaatcataatggaatatattactcaaaccaacagtgattcaccccgcacaagatgtgctaaaagtggtgaatc 42184095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 45701188 - 45701263
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||| || ||| ||||||||||||||||  || ||||||||||||||  ||||||||    
T  45701188 aacaaatcaaaatggaatatattgcttaaaagaaaagtgattcacccagcacaaggtgtgctaaaagcgatgaatc 45701263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 45468150 - 45468226
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacat-aaggtgtgctaaaattgatgaatc 847  Q
    |||||||||||||||||||||||  ||||| |||||||||||||| || ||| ||||||||||||||  ||||||||    
T  45468150 aacaaatcaaaatggaatatattgttcaaaagaaaagtgattcactccgcataaaggtgtgctaaaagcgatgaatc 45468226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 17607729 - 17607654
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||| ||||||||||||||| |||||||| | ||||||||||| | || |||||||| ||||| |||||||||    
T  17607729 aacaaataaaaatggaatatattgctcaaacggacagtgattcacctcgcacaaggtgtgttaaaagtgatgaatc 17607654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 39994749 - 39994675
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||||||||||   | |||||||||||||  | |||||||||||||| |||||||||    
T  39994749 aacaaatcaaaatggaatatattactcaaaaatatagtgattcaccccgtacaaggtgtgctaaaa-tgatgaatc 39994675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 772 - 813
Target Start/End: Complemental strand, 26405077 - 26405036
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgatt 813  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  26405077 aacaaatcaaaatggaatatatttctcaaacgaaaagtgatt 26405036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 772 - 844
Target Start/End: Original strand, 28209993 - 28210065
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatga 844  Q
    ||||||||||||||||||||||| |   ||| |||||||| ||||||| || |||||||||||||| ||||||    
T  28209993 aacaaatcaaaatggaatatattgcaacaaccaaaagtgaatcaccccgcacaaggtgtgctaaaagtgatga 28210065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 28543851 - 28543776
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||| ||||||||||||||| |||||||  |||||||||||| ||| | |||| ||||||||| || ||||||    
T  28543851 aacaaattaaaatggaatatattgctcaaaccgaaagtgattcactccatacaaggcgtgctaaaagtggtgaatc 28543776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 1206513 - 1206438
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    |||||||||||||| |||||||| |||||| | ||  ||||||||||| || |||| ||||||||| || ||||||    
T  1206513 aacaaatcaaaatgaaatatattgctcaaatggaagatgattcaccccgcacaaggcgtgctaaaagtggtgaatc 1206438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 776 - 847
Target Start/End: Complemental strand, 32603392 - 32603322
Alignment:
Q  776 aatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    |||||||||| |||||||| |||||| |  ||||||||||||||| ||||| ||| |||||| |||||||||    
T  32603392 aatcaaaatgaaatatatttctcaaa-gctaagtgattcaccccatataagatgtactaaaagtgatgaatc 32603322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 41647138 - 41647213
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||| |||||| ||||||||||||||||  |||||||||||||   || |||||||||| ||| || ||||||    
T  41647138 aacaaattaaaatgcaatatattactcaaaccgaaagtgattcaccttgcacaaggtgtgctgaaagtggtgaatc 41647213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 817
Target Start/End: Original strand, 33006689 - 33006734
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcacc 817  Q
    |||||||||||||  ||||||||||||||| | |||||||||||||    
T  33006689 aacaaatcaaaataaaatatattactcaaaagtaaagtgattcacc 33006734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 9e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 772 - 837
Target Start/End: Complemental strand, 17936419 - 17936354
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaa 837  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||| || ||||||||||||||    
T  17936419 aacaaatcaaaatgaaatatattgctcaaaggaaaagtgattcaccccgcacaaggtgtgctaaaa 17936354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 15172892 - 15172817
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||| ||||||||||||||| |||||||||| |||||||||||||  | ||  |||||||||| |||||||||    
T  15172892 aacaaattaaaatggaatatatttctcaaacgaagagtgattcaccccgaacaatatgtgctaaaagtgatgaatc 15172817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 772 - 835
Target Start/End: Complemental strand, 29934772 - 29934709
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaa 835  Q
    ||||||||||||||||||||||| |||||| || | |||||||||||| || ||||||||||||    
T  29934772 aacaaatcaaaatggaatatattgctcaaaagagaggtgattcaccccgcacaaggtgtgctaa 29934709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 772 - 847
Target Start/End: Complemental strand, 21313872 - 21313796
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaag--tgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||||||||||  || ||  |||||||||||  | |||||||||||||| |||||||||    
T  21313872 aacaaatcaaaatggaatatattactcaaaaaaacagaatgattcaccccgtacaaggtgtgctaaaa-tgatgaatc 21313796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 835
Target Start/End: Complemental strand, 1219261 - 1219198
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaa 835  Q
    |||||||||||||| |||||||||||||||  | || ||||||||||| || ||| ||||||||    
T  1219261 aacaaatcaaaatgaaatatattactcaaaatagaattgattcaccccgcacaagatgtgctaa 1219198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 801
Target Start/End: Complemental strand, 19712809 - 19712780
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaa 801  Q
    ||||||||||||||||||||||||||||||    
T  19712809 aacaaatcaaaatggaatatattactcaaa 19712780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 772 - 836
Target Start/End: Complemental strand, 18489813 - 18489749
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||||||||||||||||||| |||||| |||| |||||||||||| || |||||||||||||    
T  18489813 aacaaatcaaaatggaatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtgctaaa 18489749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 14781983 - 14782058
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||| |||||| ||  || ||||||||||||| |||||||||||||| || ||||||    
T  14781983 aacaaatcaaaatggaatatattgctcaaaagaggagagattcaccccacacaaggtgtgctaaaagtggtgaatc 14782058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 772 - 836
Target Start/End: Original strand, 16477626 - 16477691
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaa-gtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||||||||||||||||||| |||||| ||||| |||||||||||| || |||||||||||||    
T  16477626 aacaaatcaaaatggaatatattgctcaaaagaaaaggtgattcaccccgcacaaggtgtgctaaa 16477691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 775 - 836
Target Start/End: Original strand, 25026737 - 25026798
Alignment:
Q  775 aaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||||||||||||||||||||||| || |||| ||||||||| ||||| ||||||||||    
T  25026737 aaatcaaaatggaatatattactcaaaagagaagtaattcaccccgcataaagtgtgctaaa 25026798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 775 - 847
Target Start/End: Original strand, 2854115 - 2854186
Alignment:
Q  775 aaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    |||||||||||||||||||||||||||   | ||||||||||||| || |||||||||||||| |||||||||    
T  2854115 aaatcaaaatggaatatattactcaaaaacagagtgattcaccccgcacaaggtgtgctaaaa-tgatgaatc 2854186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 5675491 - 5675566
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||| | |||| || |||||||||||||| || ||||||| ||||||  ||||||||    
T  5675491 aacaaatcaaaatggaatatattgcacaaaagagaagtgattcaccccgcacaaggtgtactaaaagcgatgaatc 5675566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 25186763 - 25186838
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||| ||||||||||||||| |||||||||  ||| ||||||||| || |||| ||||||||| |||||||||    
T  25186763 aacaaataaaaatggaatatattgctcaaacgatcagtaattcaccccgcacaaggcgtgctaaaagtgatgaatc 25186838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 31848054 - 31848128
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||| ||  |||||| | ||||||||||||||| || |||||||||||||| |||||||||    
T  31848054 aacaaatcaaaatggaataaatg-ctcaaaagcaaagtgattcaccccgcacaaggtgtgctaaaagtgatgaatc 31848128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 4103083 - 4103158
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||| ||||||||||||||||| ||||||   ||||||||||||||| || |||| |||||||||  ||||||||    
T  4103083 aacaagtcaaaatggaatatattgctcaaaatgaaagtgattcaccccgcacaaggcgtgctaaaagcgatgaatc 4103158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 772 - 836
Target Start/End: Original strand, 31794673 - 31794737
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||||||||||||||||||||||||||   | ||| ||||||||| || || ||||||||||    
T  31794673 aacaaatcaaaatggaatatattactcaaaaacagagtaattcaccccgcacaaagtgtgctaaa 31794737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 775 - 837
Target Start/End: Original strand, 861 - 922
Alignment:
Q  775 aaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaa 837  Q
    |||||||||||||||||||| |||||| ||||||||||||||||| || || |||||||||||    
T  861 aaatcaaaatggaatatattgctcaaatgaaaagtgattcaccccgcacaa-gtgtgctaaaa 922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0423 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 10015 - 10090
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacga-aaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||||||||||  | | | ||||||||||| || |||||||||||||| |||||||||    
T  10015 aacaaatcaaaatggaatatattactcaaaaaacagaatgattcaccccgcacaaggtgtgctaaaa-tgatgaatc 10090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 772 - 836
Target Start/End: Complemental strand, 11060 - 10996
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaa 836  Q
    ||||||||||||||||||||||||||||||   | ||||||||||||| || |||||||| ||||    
T  11060 aacaaatcaaaatggaatatattactcaaaaagagagtgattcaccccgcacaaggtgtgttaaa 10996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 42189 - 42263
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    |||||||||||||| ||| |||||||||||   ||||||||||||||| || ||| |||||||||| |||||||||    
T  42189 aacaaatcaaaatgaaatttattactcaaaaacaaagtgattcaccccgcacaagatgtgctaaaa-tgatgaatc 42263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 847
Target Start/End: Original strand, 36042 - 36117
Alignment:
Q  772 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccacataaggtgtgctaaaattgatgaatc 847  Q
    ||||||||||||||||||||||| | |||| ||||  | ||||| ||| || ||| |||||||||| |||||||||    
T  36042 aacaaatcaaaatggaatatattgcccaaatgaaatatcattcatcccgcacaagatgtgctaaaagtgatgaatc 36117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University