View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13812_high_13 (Length: 241)
Name: NF13812_high_13
Description: NF13812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13812_high_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 39396119 - 39396342
Alignment:
| Q |
18 |
ttccttatctcgaaaaaaccagacaagccttttacaaattttcatcaggaactctgttctcatcaacttgaagctagattgaaagaacaacttgctcatg |
117 |
Q |
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| T |
39396119 |
ttccttatctcgaaaaaaccagacaagccttttacaaattttcatcaggaactctattctcatcaacttgaagccagattgaaagaacaacttgctcatg |
39396218 |
T |
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| Q |
118 |
acgaggcaataaagaaaattcctataaaaatcctagacaattatatttatttttgaactccaattttatcaggtaaccatcattacaaaaaatgaaatat |
217 |
Q |
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| T |
39396219 |
acgaggcaataaagaaaattcctataaaaatcctagacaattatatttatttttgaactccaacttcatcaggtaaccatcattacaaaaaatgaaatat |
39396318 |
T |
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| Q |
218 |
gtgcacaagcaaccaaaaacaaat |
241 |
Q |
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| T |
39396319 |
gtgcacaagcaaccaaaaacaaat |
39396342 |
T |
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