View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13812_high_3 (Length: 444)
Name: NF13812_high_3
Description: NF13812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13812_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 5398774 - 5398349
Alignment:
| Q |
1 |
tgaatcggaaacttgtgagttgtgaccaccccattatacatacgtaggtgccaagtctgtgtatttttgtgtgaaatgatactcacattgaaggggaaaa |
100 |
Q |
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| T |
5398774 |
tgaatcggaaacttgtgagttgtgaccacaccattatacatacgtaggtgccaagtctgtgtatttttgtgtgaaatgatactcacattgaaggggaaaa |
5398675 |
T |
|
| Q |
101 |
atgatgtgtagggtgaggcattgaagatggtagcttcaattgttccatgcagaagggtaggcgtctcctccatttctttaatttactacttgaaatattt |
200 |
Q |
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| T |
5398674 |
atgatgtgtagggtgaggcattgaagatggtagcttcaattgttccatgcagaagggtaggcgtctcctccatttctttaatttactacttgaaatattt |
5398575 |
T |
|
| Q |
201 |
acaacaaataaatgaaccgagagatacaaaactattgaatttgtttagacatgaaaaataattcttgagtcaatttacctttatcaatcattgcatatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
5398574 |
acaacaaataaatgaaccgagagatacaaaactattgaatttgtttagacatgaaaaataat--ttgagtcaatttacctttatcaattattgcatatta |
5398477 |
T |
|
| Q |
301 |
ccttacatatataagccagttaagttactagttgtaaaagaaaatttaaatggaaccttggaattcaattgaaagttagcaactagagaagacttgtata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5398476 |
ccttacatatataagccagttaagttactagttgtaaaagaaaatttaaatggaaccttggaattcaattgaaagttagcaactagagaagacttgtata |
5398377 |
T |
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| Q |
401 |
actttgcactcacatacaaacccaatcc |
428 |
Q |
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| T |
5398376 |
actttgcactcacatacaaacccaatcc |
5398349 |
T |
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