View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13812_high_8 (Length: 300)
Name: NF13812_high_8
Description: NF13812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13812_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 39984542 - 39984260
Alignment:
| Q |
1 |
accacaaaacattgtaggtgttcatggaaattgatctgaatgattccataactgaagttaagaagaatgtgtgtagcaatggtaaatgtgagaaaagtgt |
100 |
Q |
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| T |
39984542 |
accacaaaacattgtaggtgttcatggaaattgatctgaatgattccataactgaagttaagaagaatgtgtgtagcaatggtaaatgtgagaaaagtgt |
39984443 |
T |
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| Q |
101 |
ttgttgtgtttgcactttatcttctatatcatcaccaacatgttcatcttctagttccacttcagctattgtgtcttcatcttatcttgaactatggcat |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39984442 |
ttgttgtgtttgcactttatcttcttcttcatcaccaacatgttcatcttctagttccacttcagctattgtgtcttcatcttatcttgaactatggcat |
39984343 |
T |
|
| Q |
201 |
gcttgtgctggacctttaacatcacttccaaagaaagggaatgttgtagtttattttccacaaggtcatttggaacaagttgc |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39984342 |
gcttgtgctggacctttaacatcacttccaaagaaagggaatgttgtagtttattttccacaaggtcatttggaacaagttgc |
39984260 |
T |
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Back To:
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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 136 - 284
Target Start/End: Original strand, 22234539 - 22234687
Alignment:
| Q |
136 |
caacatgttcatcttctagttccacttcagctattgtgtcttcatcttatcttgaactatggcatgcttgtgctggacctttaacatcacttccaaagaa |
235 |
Q |
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|||| ||||||||||| ||||| |||||| | |||| ||||| |||||||||||| ||||||||||||||||||| ||| | || |||||||| ||||| |
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| T |
22234539 |
caacttgttcatcttcaagttcaacttcaccacttgtttcttcttcttatcttgaattatggcatgcttgtgctggtcctcttacctcacttcctaagaa |
22234638 |
T |
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| Q |
236 |
agggaatgttgtagtttattttccacaaggtcatttggaacaagttgct |
284 |
Q |
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||| |||||||| || ||||||||||||||||| ||||||||| ||||| |
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| T |
22234639 |
aggaaatgttgtggtgtattttccacaaggtcacttggaacaatttgct |
22234687 |
T |
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