View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13812_low_13 (Length: 267)
Name: NF13812_low_13
Description: NF13812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13812_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 28 - 220
Target Start/End: Complemental strand, 42924459 - 42924257
Alignment:
| Q |
28 |
cacagacacgacaatgacattgtaaatgtaaatgaattaactgaacctaatcacacgtgttacaaagcttatgacgtattttcgaagctaaatatgcaca |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42924459 |
cacagacacgacaatgacattgtaaatgtaaatgaattaattgaacctaatcacacgtgttacaaagcttatgacgtattttcgaagctaaatatgcaca |
42924360 |
T |
|
| Q |
128 |
tnnnnnnnttgttgct----------cataagcggaatgaagctgggattttctatttgtaacattaccaccattattattgttaacatcaatgattgaa |
217 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42924359 |
taaaaaaattgttgctttgttcataccataagcggaatgaagctgggattttctatttgtaacattaccaccattattattgttaacatcaatgattgaa |
42924260 |
T |
|
| Q |
218 |
ttg |
220 |
Q |
| |
|
||| |
|
|
| T |
42924259 |
ttg |
42924257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University