View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13812_low_15 (Length: 264)
Name: NF13812_low_15
Description: NF13812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13812_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 39396329 - 39396584
Alignment:
| Q |
1 |
aaccaaaaacaaatacaaagtagcagcaaaagcaaatgtcctacagtgggcnnnnnnntgcgcccacaaagatacaaagaaaacctctcatacatacaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39396329 |
aaccaaaaacaaatacaaagtagcagcaaaagcaaatgtcttacagtggccaaaaaaatgcgcccacaaagatacaaagaaaacccctcatacatacaca |
39396428 |
T |
|
| Q |
101 |
ataaacaccaaatgtgctgcacaaaaaaccacccattacacagcctacagtcagcacact-aaacctgccaacacatcacaacatccattacacagccta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
39396429 |
ataaacaccaaatgtgctgcacaaaaaaccacccattacacagcctacagtcagcacactcaaacctgccaacacatcacaacatccataacacagccta |
39396528 |
T |
|
| Q |
200 |
caattagcaccaacagcaaagccacacagcttagccgaagctcctccacccctttg |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39396529 |
caattagcaccaacagcaaagccacacagcttagccgaagctcctccacccctttg |
39396584 |
T |
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