View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13812_low_2 (Length: 725)
Name: NF13812_low_2
Description: NF13812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13812_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 287 - 643
Target Start/End: Complemental strand, 11438262 - 11437903
Alignment:
| Q |
287 |
agtagtgatagatgaacctccccatgtggcatacatcttcttgaccaccacacaaaaatgtgacatatggcaacgtggtccccacagattcaccaacttt |
386 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||||| |
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| T |
11438262 |
agtagtgatagatgaaccactccatgtggcatacatcttcttgaccaccacacaaaaatgtgacatttggcagcgtggcccccacagattccccaacttc |
11438163 |
T |
|
| Q |
387 |
gnnnnnnnnnnnnnnnnnnnnnntccttcaccccctttctctgactgacggccgccgccgctcccaccaccaccaccatcatcataacccattccctttc |
486 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11438162 |
gtctctcactctctcttctctcttccttcaccccctttctctgactgacggccgccgccgctcccaccaccaccaccatcatcatcacccattccctttt |
11438063 |
T |
|
| Q |
487 |
tcactaccaccgtttttccatcatcggtcagaacaccatcacacgccgccgtttcagatccggtccaacatcaccaccatcacgtgcaccgtgtcttttc |
586 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
11438062 |
tcactaccaccgtttttccatcaccggtcagaacaccatcacacgccgccgtttcagatccggtccaacatcaccaccatcacgtgcaccgtttctttgc |
11437963 |
T |
|
| Q |
587 |
cac---cattatcatctttttgtctctctcactctctcaccggtgttgtccaccaccacc |
643 |
Q |
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||| ||| ||||||||| | ||||||||||||||||| ||| |||||||||||||||| |
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| T |
11437962 |
caccatcatcatcatctttctatctctctcactctctcatcggcgttgtccaccaccacc |
11437903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 141 - 248
Target Start/End: Original strand, 47483296 - 47483400
Alignment:
| Q |
141 |
cagggacggacccacgtgttctactatgtgagccgtggctctcacttagtttagaa-tttttattttaaaatactagtacatgtttggggtgtggtagtg |
239 |
Q |
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| T |
47483296 |
cagggacggaccca-gtgttccactatgtgggccgtggccctcacttagtttagaattttttattttaaaatac---tacatgtttggggtgtggtagtg |
47483391 |
T |
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| Q |
240 |
tttgtgact |
248 |
Q |
| |
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||||||||| |
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| T |
47483392 |
tttgtgact |
47483400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 594 - 643
Target Start/End: Complemental strand, 11437886 - 11437837
Alignment:
| Q |
594 |
atcatctttttgtctctctcactctctcaccggtgttgtccaccaccacc |
643 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
11437886 |
atcatctttctgtctctctcactctctcaccggcgttgtccaccaccacc |
11437837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 285
Target Start/End: Original strand, 47489151 - 47489182
Alignment:
| Q |
254 |
tataaaacaattgtattatccaattactaata |
285 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
47489151 |
tataaaacaattgtattatccaattactaata |
47489182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 52328327 - 52328095
Alignment:
| Q |
15 |
attcgtatcctcgaataaattaaaatcgtatatccaacgcatccatttgattccaaaaataacattgtagttttgtacaaaaatgctcttatatttgaac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52328327 |
attcgtatcctcgaataaattaaaatcgtatatccaacgcatccatttgattccaaaaataacattgtagttttgtacaaaaatgctcttatattt-aac |
52328229 |
T |
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| Q |
115 |
taaggatattaatgggtatccataagcagggacggacccacgtgttctactatgtgagccgtggctctcacttagtttagaa-tttttattttaaaatac |
213 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||||||||||| |
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| T |
52328228 |
taaggatattaatgggtatccatgagcagggacggacccacgtgttctactatgtgggccg-ggccctcacttagtttagaattttttattttaaaatac |
52328130 |
T |
|
| Q |
214 |
tagtacatgtttggggtgtggtagtgtttgtgact |
248 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
52328129 |
tagtacatgtttggggtgtggtagtgtttgtgact |
52328095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 52327989 - 52327954
Alignment:
| Q |
246 |
acttgctctataaaacaattgtattatccaattact |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
52327989 |
acttgctctataaaacaattgtattatccaattact |
52327954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 285
Target Start/End: Original strand, 33800622 - 33800653
Alignment:
| Q |
254 |
tataaaacaattgtattatccaattactaata |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
33800622 |
tataaaacaattgtattatccaattactaata |
33800653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 503
Target Start/End: Complemental strand, 32954566 - 32954500
Alignment:
| Q |
437 |
gccgccgccgctcccaccaccaccaccatcatcataacccattccctttctcactaccaccgttttt |
503 |
Q |
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||||||| ||| ||||||||||||||||||||||| | | || ||||| ||||| |||||| ||||| |
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| T |
32954566 |
gccgccgtcgcccccaccaccaccaccatcatcattatcgatccccttcctcaccaccaccattttt |
32954500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 503
Target Start/End: Original strand, 12415228 - 12415294
Alignment:
| Q |
437 |
gccgccgccgctcccaccaccaccaccatcatcataacccattccctttctcactaccaccgttttt |
503 |
Q |
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||||||| ||| ||||||||||||||||||||||| | | || ||||| ||||| |||||| ||||| |
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| T |
12415228 |
gccgccgtcgcccccaccaccaccaccatcatcattatcgatccccttcctcaccaccaccattttt |
12415294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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