View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13812_low_7 (Length: 372)

Name: NF13812_low_7
Description: NF13812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13812_low_7
NF13812_low_7
[»] chr7 (2 HSPs)
chr7 (101-354)||(18780373-18780629)
chr7 (10-114)||(18780646-18780749)
[»] chr3 (8 HSPs)
chr3 (101-250)||(1605662-1605813)
chr3 (11-114)||(1605829-1605932)
chr3 (101-200)||(1622832-1622934)
chr3 (11-114)||(1622951-1623054)
chr3 (307-354)||(1605615-1605662)
chr3 (10-53)||(1629186-1629229)
chr3 (133-170)||(24595188-24595225)
chr3 (133-170)||(51308770-51308807)
[»] chr8 (1 HSPs)
chr8 (133-170)||(4678054-4678091)
[»] chr4 (1 HSPs)
chr4 (133-170)||(55849574-55849611)
[»] chr1 (1 HSPs)
chr1 (133-170)||(20225645-20225682)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 101 - 354
Target Start/End: Complemental strand, 18780629 - 18780373
Alignment:
Q  101 ttcatattcatataaacattatcgttgtacaat---accttgagtttgagggaagctattaagaaaaatgatagttagtagtgtaagtaattagttcaat 197  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18780629 ttcatattcatataaacattatcgttgtacaatcataccttgagtttgagggaagctattaagaaaaatgatagttagtagtgtaagtaattagttcaat 18780530  T
Q  198 tattgggtaagtgtgaaatacaaaattagttagagtttatcattaggaagttagtttgttaatcccctttctagctctatataagagcatcacttgtatt 297  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18780529 tattgggtaagtgtgaaatacaaaattagttagagtttattattaggaagttagtttgttaatcccctttctagctctatataagagcatcacttgtatt 18780430  T
Q  298 aattttacgaccttttatcaaaatgattctctacgagtattattctcattcaacctt 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18780429 aattttacgaccttttatcaaaatgattctctacgagtattattctcattcaacctt 18780373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 18780749 - 18780646
Alignment:
Q  10 attattctacttaattctttgtaattaaattcattgtaattcttgtaagagcatacccatattcttttgtacattgcgacagatattctttttcatattc 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  18780749 attattgtacttaattctttgtaattaaattcattgtaattcttgtaagagcatacccatattcttttgtacattgcgagagatattc-ttttcatattc 18780651  T
Q  110 atata 114  Q
    |||||    
T  18780650 atata 18780646  T

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Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 101 - 250
Target Start/End: Complemental strand, 1605813 - 1605662
Alignment:
Q  101 ttcatattcatataaacattatcgttgtaca--ataccttgagtttgagggaagctattaagaaaaatgatagttagtagtgtaagtaattagttcaatt 198  Q
    ||||||||||||||||||||||||||||| |  ||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1605813 ttcatattcatataaacattatcgttgtaaatcatatcttgagtttaagggaagctattaagaataatgatagttagtagtgtaagtaattagttcaatt 1605714  T
Q  199 attgggtaagtgtgaaatacaaaattagttagagtttatcattaggaagtta 250  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1605713 atttggtaagtgtgaaatacaaaattagttagagtttattattaggaagtta 1605662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 1605932 - 1605829
Alignment:
Q  11 ttattctacttaattctttgtaattaaattcattgtaattcttgtaagagcatacccatattcttttgtacattgcgacagatattctttttcatattca 110  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||| ||||| |||||||||||||||||||||    
T  1605932 ttattgtacttaattctttgtaattaagttcattgtaattcttgtaagagcatgctcatattcttttgtacactgcgagagatattctttttcatattca 1605833  T
Q  111 tata 114  Q
    ||||    
T  1605832 tata 1605829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 1622934 - 1622832
Alignment:
Q  101 ttcatattcatataaacattatcgttgtacaat---accttgagtttgagggaagctattaagaaaaatgatagttagtagtgtaagtaattagttcaat 197  Q
    |||||||||||||||||||||||||||||||||   || ||||||||||| | |||||||||||| ||||||||||||  ||||||||||||||||||||    
T  1622934 ttcatattcatataaacattatcgttgtacaatcatacattgagtttgagaggagctattaagaataatgatagttagcggtgtaagtaattagttcaat 1622835  T
Q  198 tat 200  Q
    |||    
T  1622834 tat 1622832  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 1623054 - 1622951
Alignment:
Q  11 ttattctacttaattctttgtaattaaattcattgtaattcttgtaagagcatacccatattcttttgtacattgcgacagatattctttttcatattca 110  Q
    ||||| ||||||||||||||||||||| |||||||||||| |||||||||||| | |||||||||||||||| |  || ||||||| ||||||||| |||    
T  1623054 ttattgtacttaattctttgtaattaagttcattgtaattattgtaagagcatgctcatattcttttgtacactttgagagatattatttttcatagtca 1622955  T
Q  111 tata 114  Q
    ||||    
T  1622954 tata 1622951  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 1605662 - 1605615
Alignment:
Q  307 accttttatcaaaatgattctctacgagtattattctcattcaacctt 354  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||    
T  1605662 accttttatcaaaatgattctcttcgtgtattattctcattcaacctt 1605615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 1629229 - 1629186
Alignment:
Q  10 attattctacttaattctttgtaattaaattcattgtaattctt 53  Q
    |||||||||| || || |||||||||||||||||||||||||||    
T  1629229 attattctacatagttatttgtaattaaattcattgtaattctt 1629186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 24595188 - 24595225
Alignment:
Q  133 taccttgagtttgagggaagctattaagaaaaatgata 170  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  24595188 taccttgagtttgagggaggctattaagaataatgata 24595225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 51308770 - 51308807
Alignment:
Q  133 taccttgagtttgagggaagctattaagaaaaatgata 170  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  51308770 taccttgagtttgagggaggctattaagaataatgata 51308807  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 4678054 - 4678091
Alignment:
Q  133 taccttgagtttgagggaagctattaagaaaaatgata 170  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  4678054 taccttgagtttgagggaggctattaagaataatgata 4678091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 55849611 - 55849574
Alignment:
Q  133 taccttgagtttgagggaagctattaagaaaaatgata 170  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  55849611 taccttgagtttgagggaggctattaagaataatgata 55849574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 20225682 - 20225645
Alignment:
Q  133 taccttgagtttgagggaagctattaagaaaaatgata 170  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  20225682 taccttgagtttgagggaggctattaagaataatgata 20225645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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