View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13812_low_9 (Length: 317)
Name: NF13812_low_9
Description: NF13812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13812_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 19671977 - 19671662
Alignment:
| Q |
1 |
agccgaaacagagaggttctggagtaggaaagaaggcccaaaaatcattcaaaagcaagtcaaggtatcaaattaataaaacctctctcatttccaaaac |
100 |
Q |
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| T |
19671977 |
agccgaaacagagaggttctggagtaggaaagaaggcccaaaaatcattcaaaagcaagtcaaggtatcaaattaataaaacctctctcatttccaaaac |
19671878 |
T |
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| Q |
101 |
tattatctgatccttttaagcatcaatataaatatttgtctct--aattttcattttctttgtgttcaaaatttctatgaatatttttactttatggttg |
198 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19671877 |
tattatctgatccttttaagcatcaatagaaatatttgtctctctaattttcattttcttggtgttcaaaatttctatgaatatttttactttatggttg |
19671778 |
T |
|
| Q |
199 |
tacagttgctggcacttgtatattttcctcttcctctaaatagaaagcagaacatatcagttaataaatttgtgatatttcgttttcttttctagtgtaa |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19671777 |
tacagttgctggcacttgtatattttcctcttcctctaaatagaaagcagaacatatcagttaataaatttgtgatatttcattttcttttctagtgtaa |
19671678 |
T |
|
| Q |
299 |
-aaaatatggtatatc |
313 |
Q |
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||||||||||||||| |
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| T |
19671677 |
aaaaatatggtatatc |
19671662 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 18022175 - 18022077
Alignment:
| Q |
1 |
agccgaaacagagaggttctggagtaggaaagaaggcccaaaaatcattcaaaagcaagtcaaggtatcaaattaataaaacctctctcatttccaaaac |
100 |
Q |
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|||||||||| ||||||||||||||||||||| | | | ||||| |||||||||||||||||||||| ||| | ||||||| ||||||||| |||| |
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| T |
18022175 |
agccgaaacaaagaggttctggagtaggaaag---gtcaagaaatcgttcaaaagcaagtcaaggtatc--atttaaaaaacctatctcatttctgaaac |
18022081 |
T |
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